Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   M2Z51_RS01530 Genome accession   NZ_AP024967
Coordinates   335483..336115 (-) Length   210 a.a.
NCBI ID   WP_248532064.1    Uniprot ID   -
Organism   Vibrio cholerae strain V130003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 330483..341115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Z51_RS01510 (V130003_02960) astA 330549..331568 (+) 1020 WP_000962039.1 arginine N-succinyltransferase -
  M2Z51_RS01515 (V130003_02970) astD 331578..333035 (+) 1458 WP_032477103.1 succinylglutamate-semialdehyde dehydrogenase -
  M2Z51_RS01520 (V130003_02980) - 333177..333968 (+) 792 WP_000189091.1 DUF1338 domain-containing protein -
  M2Z51_RS01525 - 334056..335410 (+) 1355 WP_100067999.1 IS3 family transposase -
  M2Z51_RS01530 (V130003_03010) crp 335483..336115 (-) 633 WP_248532064.1 cAMP-activated global transcriptional regulator CRP Regulator
  M2Z51_RS01535 (V130003_03020) - 336358..337227 (-) 870 WP_001274667.1 phosphoribulokinase -
  M2Z51_RS01540 (V130003_03030) - 337324..337533 (-) 210 WP_000586561.1 YheU family protein -
  M2Z51_RS01545 (V130003_03040) - 337662..338651 (-) 990 WP_000206394.1 hydrolase -
  M2Z51_RS01550 (V130003_03050) - 338648..339133 (-) 486 WP_001278734.1 TIGR02444 family protein -
  M2Z51_RS01555 (V130003_03060) - 339134..341050 (-) 1917 WP_000627673.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 8.2784

>NTDB_id=76299 M2Z51_RS01530 WP_248532064.1 335483..336115(-) (crp) [Vibrio cholerae strain V130003]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRITQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=76299 M2Z51_RS01530 WP_248532064.1 335483..336115(-) (crp) [Vibrio cholerae strain V130003]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGTGAGAAGGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTCGGCCTGTTTGAAGAAGGT
CAAGAGCGTACCGCTTGGGTTCGTGCCAAAACACCGTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAGTTAAT
CCAAGTTAACCCAGACATTTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCACACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGACGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.524

100

0.995
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.635

99.048

0.462

Multiple sequence alignment