Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QMK09_RS03355 Genome accession   NZ_CP125383
Coordinates   636683..637456 (+) Length   257 a.a.
NCBI ID   WP_002875504.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 631683..642456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS03340 (QMK09_03340) - 632532..634466 (-) 1935 WP_052791399.1 ribonuclease R family protein -
  QMK09_RS03345 (QMK09_03345) ilvC 634585..635607 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  QMK09_RS03350 (QMK09_03350) - 635611..636693 (+) 1083 WP_002874286.1 divergent polysaccharide deacetylase family protein -
  QMK09_RS03355 (QMK09_03355) dprA 636683..637456 (+) 774 WP_002875504.1 DNA-processing protein DprA Machinery gene
  QMK09_RS03360 (QMK09_03360) dprB 637453..637836 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  QMK09_RS03365 (QMK09_03365) - 637865..638704 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMK09_RS03370 (QMK09_03370) msrA 638880..639377 (-) 498 WP_002875505.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMK09_RS03375 (QMK09_03375) ppa 639419..639937 (-) 519 WP_002867724.1 inorganic diphosphatase -
  QMK09_RS03380 (QMK09_03380) adk 639947..640525 (-) 579 WP_002859580.1 adenylate kinase -
  QMK09_RS03385 (QMK09_03385) aspS 640522..642273 (-) 1752 WP_002875506.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28820.56 Da        Isoelectric Point: 6.4874

>NTDB_id=762977 QMK09_RS03355 WP_002875504.1 636683..637456(+) (dprA) [Campylobacter jejuni strain SKBC1]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYALPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=762977 QMK09_RS03355 WP_002875504.1 636683..637456(+) (dprA) [Campylobacter jejuni strain SKBC1]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAAGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGCTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.665

100

0.977
  dprA Helicobacter pylori 26695

48.75

93.385

0.455