Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QMK09_RS03360 Genome accession   NZ_CP125383
Coordinates   637453..637836 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain SKBC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 632453..642836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS03340 (QMK09_03340) - 632532..634466 (-) 1935 WP_052791399.1 ribonuclease R family protein -
  QMK09_RS03345 (QMK09_03345) ilvC 634585..635607 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  QMK09_RS03350 (QMK09_03350) - 635611..636693 (+) 1083 WP_002874286.1 divergent polysaccharide deacetylase family protein -
  QMK09_RS03355 (QMK09_03355) dprA 636683..637456 (+) 774 WP_002875504.1 DNA-processing protein DprA Machinery gene
  QMK09_RS03360 (QMK09_03360) dprB 637453..637836 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  QMK09_RS03365 (QMK09_03365) - 637865..638704 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMK09_RS03370 (QMK09_03370) msrA 638880..639377 (-) 498 WP_002875505.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMK09_RS03375 (QMK09_03375) ppa 639419..639937 (-) 519 WP_002867724.1 inorganic diphosphatase -
  QMK09_RS03380 (QMK09_03380) adk 639947..640525 (-) 579 WP_002859580.1 adenylate kinase -
  QMK09_RS03385 (QMK09_03385) aspS 640522..642273 (-) 1752 WP_002875506.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=762978 QMK09_RS03360 WP_002852281.1 637453..637836(+) (dprB) [Campylobacter jejuni strain SKBC1]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=762978 QMK09_RS03360 WP_002852281.1 637453..637836(+) (dprB) [Campylobacter jejuni strain SKBC1]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TTATTGTAGGCATTCCTAAGGGCGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449