Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NM686_RS18675 Genome accession   NZ_CP113517
Coordinates   3961063..3962409 (-) Length   448 a.a.
NCBI ID   WP_269021892.1    Uniprot ID   -
Organism   Methylomonas rapida strain MP1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3956063..3967409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM686_RS18660 (NM686_018660) - 3957388..3958233 (-) 846 WP_255189331.1 HDOD domain-containing protein -
  NM686_RS18665 (NM686_018665) - 3958420..3960282 (+) 1863 WP_255189332.1 EAL domain-containing protein -
  NM686_RS18670 (NM686_018670) - 3960445..3960909 (+) 465 WP_255189333.1 hypothetical protein -
  NM686_RS18675 (NM686_018675) pilR 3961063..3962409 (-) 1347 WP_269021892.1 sigma-54 dependent transcriptional regulator Regulator
  NM686_RS18680 (NM686_018680) - 3962406..3964031 (-) 1626 WP_255189335.1 PAS domain-containing sensor histidine kinase -
  NM686_RS18685 (NM686_018685) sucC 3964155..3965375 (+) 1221 WP_255189336.1 ADP-forming succinate--CoA ligase subunit beta -
  NM686_RS18690 (NM686_018690) sucD 3965372..3966238 (+) 867 WP_255189337.1 succinate--CoA ligase subunit alpha -
  NM686_RS21840 - 3966310..3966480 (+) 171 Protein_3688 DUF4160 domain-containing protein -
  NM686_RS18695 (NM686_018695) - 3966458..3966703 (+) 246 WP_255189338.1 DUF2442 domain-containing protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49173.01 Da        Isoelectric Point: 6.6965

>NTDB_id=762656 NM686_RS18675 WP_269021892.1 3961063..3962409(-) (pilR) [Methylomonas rapida strain MP1]
MNMPLTLVVDDEPDILELLEITLGRMNIQTCCAENLGAARQLLAKQRFDLCLTDMRLPDGDGLELIDYIQERGLSLPVAV
ITAHGSIDVAIKAMKKGAFDFLTKPVDLAALRQLVNNALQTSQFQATGKDRRTRDILLGESAVMREIRSKIQKVARNQAP
IYISGESGSGKELVAKLIHQQSPRSDKPFVAINCGAIPHELMESEFFGHKKGSFSGAIADKQGFFQAADGGTLFLDEVAD
LPLSLQVKLLRAIQEKKIRPVGEQLEVPVDVRLLSATHKELAKMVQEGSFRQDLYYRINVIELHLPPLRARASDIPQIAT
HLLARLAKANGLPVPELTESALKALMRYAFPGNVRELENILERALALHEGRCIEVEDLSLPAAEGQPAAEPDGVRAQAIS
LETYLANVEKKALVAVLKDNSGDKVAAAQQLGMTIRSLCYRLKKLGLE

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=762656 NM686_RS18675 WP_269021892.1 3961063..3962409(-) (pilR) [Methylomonas rapida strain MP1]
ATGAATATGCCCCTCACACTGGTGGTTGATGATGAACCCGATATCCTTGAACTGTTGGAGATTACGCTGGGGCGCATGAA
TATCCAGACCTGTTGCGCCGAGAATCTAGGCGCGGCCCGGCAACTGCTGGCCAAACAGCGTTTTGATTTGTGTCTGACCG
ATATGCGCCTGCCGGATGGGGACGGTCTGGAATTGATCGACTATATTCAAGAGCGCGGGCTATCGTTGCCGGTCGCGGTC
ATCACGGCGCATGGCAGTATCGACGTGGCGATAAAAGCCATGAAGAAAGGCGCGTTCGATTTTTTGACCAAGCCCGTCGA
TTTGGCGGCGTTGCGGCAGTTGGTCAACAATGCCCTGCAAACCTCGCAATTCCAGGCTACGGGAAAGGATCGCCGAACCC
GCGACATCTTGCTGGGTGAGTCGGCTGTGATGCGCGAGATTCGGTCGAAAATCCAAAAAGTGGCGCGCAACCAGGCTCCC
ATCTATATCAGCGGCGAATCGGGTTCCGGCAAGGAATTGGTCGCCAAGCTGATTCATCAGCAAAGCCCACGCAGCGACAA
GCCTTTCGTCGCGATCAACTGCGGTGCCATCCCGCATGAATTGATGGAGAGCGAATTTTTCGGGCACAAAAAAGGCAGCT
TTAGCGGTGCGATTGCCGACAAGCAAGGTTTTTTCCAGGCGGCCGATGGCGGGACCTTGTTTCTGGACGAGGTGGCCGAT
TTGCCGTTAAGCCTGCAGGTTAAATTGCTGCGAGCAATACAGGAAAAGAAGATTCGCCCCGTTGGCGAGCAGCTCGAAGT
GCCGGTTGACGTGCGTTTACTGAGCGCCACGCACAAGGAATTGGCGAAGATGGTGCAAGAGGGCTCCTTCAGACAGGACT
TGTATTACCGCATCAATGTGATTGAACTGCATTTGCCGCCATTGCGCGCGCGGGCCAGCGACATCCCGCAGATTGCCACG
CATTTGCTGGCGCGTCTGGCCAAAGCCAACGGCTTGCCTGTTCCGGAGTTAACCGAATCGGCGTTGAAGGCTTTGATGCG
GTATGCTTTTCCGGGCAATGTACGCGAATTGGAAAACATCCTGGAACGCGCGCTGGCCCTGCACGAAGGCAGATGTATTG
AAGTCGAGGATTTGAGTTTGCCTGCCGCGGAAGGACAGCCCGCGGCAGAACCCGATGGTGTGCGAGCCCAAGCCATTTCG
CTGGAAACTTACCTGGCGAATGTCGAAAAAAAGGCGTTGGTCGCGGTTTTAAAAGACAACAGCGGCGACAAAGTCGCCGC
CGCGCAGCAATTGGGCATGACGATACGTTCGTTGTGCTATCGCTTGAAAAAACTGGGATTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(137-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.889

100

0.612
  pilR Acinetobacter baumannii strain A118

47.835

100

0.493
  luxO Vibrio cholerae strain A1552

38.839

100

0.388