Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   OPT60_RS08785 Genome accession   NZ_CP125359
Coordinates   1781747..1783762 (-) Length   671 a.a.
NCBI ID   WP_084916739.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain UT_10236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1776747..1788762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPT60_RS08765 (OPT60_08765) - 1777542..1777994 (+) 453 WP_003052566.1 universal stress protein -
  OPT60_RS08770 (OPT60_08770) - 1778157..1779545 (-) 1389 WP_012767516.1 Cof-type HAD-IIB family hydrolase -
  OPT60_RS08775 (OPT60_08775) - 1779618..1780583 (+) 966 WP_003053845.1 asparaginase -
  OPT60_RS08780 (OPT60_08780) - 1780633..1781550 (-) 918 WP_012767517.1 aldo/keto reductase -
  OPT60_RS08785 (OPT60_08785) recG/mmsA 1781747..1783762 (-) 2016 WP_084916739.1 ATP-dependent DNA helicase RecG Machinery gene
  OPT60_RS08790 (OPT60_08790) - 1783863..1785317 (-) 1455 WP_042357985.1 ABC transporter ATP-binding protein -
  OPT60_RS08795 (OPT60_08795) - 1785254..1785934 (-) 681 WP_003060027.1 energy-coupling factor transporter transmembrane component T -
  OPT60_RS08800 (OPT60_08800) - 1785931..1786524 (-) 594 WP_003053895.1 MptD family putative ECF transporter S component -
  OPT60_RS08805 (OPT60_08805) - 1786521..1788191 (-) 1671 WP_015058020.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75189.96 Da        Isoelectric Point: 6.6344

>NTDB_id=762428 OPT60_RS08785 WP_084916739.1 1781747..1783762(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
MLLTAPIAHLKGLGPKSAEKFQKLGIYQIKDLLLYYPFRYEDFKSKSVLELLDGEKAVITGTLVTPPNVQYYGFKRNRLT
FKIKQGEVVIGVSFFNQPYLQDKLTLGNEVAIFGKWDQKKTALTGMKLLMTVEDDLQPVYHVAQGVSQTALIKAIKAAFD
SGALDELKENIPDSLLEKYRLMPRQEAVYAMHFPKTLTDYKQALRRIKFEELFYFQLRLQVLKQANRSENSGLAIAFDQE
KINHQIAALPFPLTQAQERSLQEILRDMRSGAHMNRLLQGDVGSGKTVIASLAMYAAYTAGLQSALMVPTEILAEQHYDS
LIKLFPNLSIAILTSGMKAPEKRTALAAIADGSVDMIVGTHALIQDAVQYHKLGLVITDEQHRFGVKQRRIFREKGDNPD
VLMMTATPIPRTLAITAYGEMDVSIIDELPAGRKPIVTRWVKHQQLDTVLAWMKTELEQGAQAYVISPLIEESEALDLKN
AVDLEAELKAYFKASARIALMHGKMKADEKEAIMQAFKAQEIDLLVSTTVIEVGVNVPNASIMVIMDADRFGLSQLHQLR
GRVGRGHKQSYAILVANPKTESGKERMAIMTTTNDGFVLAEADLKMRGAGEIFGTRQSGLPEFKTADIVEDYAILEEARK
VATMITSEPHWEQQEEWQMVLNYLDTTADFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=762428 OPT60_RS08785 WP_084916739.1 1781747..1783762(-) (recG/mmsA) [Streptococcus dysgalactiae subsp. equisimilis strain UT_10236]
ATGCTATTAACAGCTCCGATTGCTCACTTAAAAGGCCTAGGACCCAAGTCAGCAGAAAAATTTCAAAAATTAGGTATTTA
TCAGATAAAAGACCTATTGCTCTACTATCCTTTTCGTTATGAAGATTTTAAGAGCAAGTCGGTGTTAGAGCTGTTAGATG
GTGAAAAAGCCGTTATCACAGGAACCCTTGTGACCCCGCCGAATGTACAATATTACGGGTTCAAACGAAACCGACTGACC
TTTAAAATCAAACAAGGAGAAGTGGTGATAGGGGTTAGTTTTTTCAACCAACCCTATTTACAGGATAAATTAACGCTGGG
CAATGAAGTTGCTATTTTTGGAAAATGGGACCAGAAAAAAACAGCTCTAACAGGTATGAAATTGCTGATGACTGTGGAGG
ATGACTTGCAGCCAGTTTATCATGTAGCTCAGGGAGTCAGTCAAACAGCACTCATTAAAGCCATTAAAGCAGCTTTTGAT
AGTGGTGCTTTAGACGAATTGAAAGAGAATATCCCAGATAGTCTTCTTGAGAAATATCGATTAATGCCAAGGCAAGAAGC
AGTTTATGCCATGCATTTTCCTAAAACCTTGACTGACTATAAGCAGGCGTTGAGGCGTATTAAGTTCGAAGAACTCTTTT
ATTTTCAACTGCGACTGCAGGTCTTGAAACAAGCCAATAGGTCAGAAAACAGTGGATTAGCCATCGCATTTGATCAGGAA
AAGATAAATCATCAAATTGCTGCTCTGCCATTTCCTTTAACTCAAGCGCAGGAACGTAGTTTACAGGAAATTTTGAGGGA
TATGCGTTCAGGTGCCCATATGAATCGGCTGTTGCAAGGGGATGTTGGTTCTGGGAAAACAGTTATTGCTAGCCTTGCCA
TGTATGCGGCTTATACAGCAGGGCTTCAATCGGCACTAATGGTACCCACAGAAATTCTGGCTGAGCAGCATTATGATAGT
CTAATCAAGCTTTTTCCGAACCTCTCTATTGCCATTCTGACGTCAGGTATGAAGGCTCCTGAAAAACGGACGGCTTTAGC
GGCCATTGCAGATGGGTCGGTGGATATGATTGTGGGGACCCACGCGCTCATTCAAGATGCTGTTCAATATCACAAATTAG
GGCTTGTTATCACAGATGAGCAACACCGATTTGGAGTGAAACAACGCCGTATTTTCCGCGAAAAAGGTGATAATCCAGAT
GTGCTCATGATGACGGCAACCCCTATTCCAAGGACATTAGCTATTACAGCTTATGGGGAAATGGATGTTTCTATTATTGA
TGAGTTACCAGCTGGTCGAAAACCTATTGTCACTCGTTGGGTTAAGCACCAACAATTGGACACCGTTTTGGCTTGGATGA
AAACGGAACTGGAGCAAGGGGCACAAGCCTATGTGATTTCGCCTTTGATTGAGGAATCTGAAGCTTTGGACCTTAAAAAT
GCTGTGGATTTGGAAGCTGAATTAAAAGCTTATTTTAAAGCATCAGCCCGTATAGCCCTTATGCATGGTAAGATGAAGGC
AGATGAAAAAGAAGCTATTATGCAGGCTTTCAAGGCTCAAGAGATTGATCTCTTGGTGTCAACAACAGTCATTGAAGTCG
GTGTCAATGTTCCCAACGCTAGTATCATGGTCATCATGGATGCGGACCGTTTTGGACTTAGTCAACTGCATCAGCTACGT
GGCCGTGTCGGACGTGGTCACAAGCAGTCCTATGCGATTCTAGTAGCTAATCCTAAAACAGAATCAGGAAAGGAACGCAT
GGCCATTATGACAACAACCAATGATGGTTTTGTTCTTGCTGAGGCAGATCTCAAAATGAGGGGCGCTGGCGAAATATTTG
GAACCCGCCAATCAGGTCTTCCCGAATTTAAAACCGCAGATATTGTAGAGGACTACGCGATTCTGGAAGAAGCTCGCAAA
GTAGCGACGATGATTACCTCAGAGCCTCACTGGGAGCAACAGGAAGAATGGCAGATGGTGCTGAATTACCTTGACACGAC
GGCAGACTTTGATTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-664)

Helicase conserved C-terminal domain (Helicase_C)

(455-566)

DEAD/DEAH box helicase (DEAD)

(254-411)

RecG wedge domain (RecG_wedge)

(6-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.001

100

0.69
  recG/mmsA Streptococcus pneumoniae R36A

69.001

100

0.69
  recG Bacillus subtilis subsp. subtilis str. 168

51.756

97.615

0.505
  recG Neisseria meningitidis strain C311

39.726

97.914

0.389