Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OQG81_RS10420 Genome accession   NZ_CP113440
Coordinates   1979090..1979590 (-) Length   166 a.a.
NCBI ID   WP_014295231.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain E37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1979090..1987616 1979090..1979590 within 0


Gene organization within MGE regions


Location: 1979090..1987616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQG81_RS10420 (OQG81_10415) ssb 1979090..1979590 (-) 501 WP_014295231.1 single-stranded DNA-binding protein Machinery gene
  OQG81_RS10425 (OQG81_10420) rpsF 1979602..1979892 (-) 291 WP_009854900.1 30S ribosomal protein S6 -
  OQG81_RS10430 (OQG81_10425) - 1980117..1980281 (-) 165 WP_014295232.1 hypothetical protein -
  OQG81_RS10435 (OQG81_10430) - 1980708..1981818 (+) 1111 Protein_2005 IS3 family transposase -
  OQG81_RS10440 (OQG81_10435) - 1982074..1983075 (-) 1002 WP_099412157.1 hypothetical protein -
  OQG81_RS10445 (OQG81_10440) - 1983403..1984083 (+) 681 WP_265659223.1 IS6 family transposase -
  OQG81_RS10450 (OQG81_10445) - 1984441..1984623 (+) 183 WP_039671202.1 hypothetical protein -
  OQG81_RS10455 (OQG81_10450) mutY 1985710..1986864 (+) 1155 WP_058621394.1 A/G-specific adenine glycosylase -
  OQG81_RS10460 (OQG81_10455) - 1987045..1987335 (+) 291 WP_081498588.1 GFA family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18383.98 Da        Isoelectric Point: 4.7187

>NTDB_id=762311 OQG81_RS10420 WP_014295231.1 1979090..1979590(-) (ssb) [Streptococcus macedonicus strain E37]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLSNWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADDFQILESRATREGQSGGFNNNNSSFGGSSNGGGFSSQSSQSQTPNFGRDESPFGNSNPMDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=762311 OQG81_RS10420 WP_014295231.1 1979090..1979590(-) (ssb) [Streptococcus macedonicus strain E37]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGTGATGCAGAACTCCGTTACACACCATCTAATCAAGCCGTTGC
CACATTTACACTTGCTGTAAACCGCAACTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGCCAACAGGCAGAAAATCTGTCTAACTGGGCTAAAAAAGGCACATTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGTGTTTATGTAACAGAGATTGTTGCAGATGATTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGTCAATCAGGTGGATTCAACAATAACAATTCATCATTTGGTGGCTCATCAAACGGTGGTGGATTCTCAT
CGCAATCTTCACAATCACAAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCAATTCAAATCCAATGGACATTTCA
GATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.621

100

0.614
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

65.663

0.361