Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OU419_RS04925 Genome accession   NZ_CP113432
Coordinates   1037428..1038765 (-) Length   445 a.a.
NCBI ID   WP_254471107.1    Uniprot ID   -
Organism   Pseudomonas triclosanedens strain ZM23     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032428..1043765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU419_RS04895 (OU419_04895) - 1033035..1033607 (-) 573 WP_254471113.1 PilX N-terminal domain-containing pilus assembly protein -
  OU419_RS04900 (OU419_04900) - 1033604..1034353 (-) 750 WP_254471112.1 PilW family protein -
  OU419_RS04905 (OU419_04905) pilV 1034363..1034932 (-) 570 WP_254471111.1 type IV pilus modification protein PilV -
  OU419_RS04910 (OU419_04910) - 1034944..1035426 (-) 483 WP_254471110.1 GspH/FimT family pseudopilin -
  OU419_RS04915 (OU419_04915) - 1035577..1036089 (-) 513 WP_254471109.1 GspH/FimT family protein -
  OU419_RS04920 (OU419_04920) thiO 1036288..1037397 (+) 1110 WP_254471108.1 glycine oxidase ThiO -
  OU419_RS04925 (OU419_04925) pilR 1037428..1038765 (-) 1338 WP_254471107.1 sigma-54 dependent transcriptional regulator Regulator
  OU419_RS04930 (OU419_04930) pilS 1038781..1040370 (-) 1590 WP_254471106.1 PAS domain-containing sensor histidine kinase Regulator
  OU419_RS04935 (OU419_04935) - 1040360..1040596 (-) 237 WP_254471105.1 PP0621 family protein -
  OU419_RS04940 (OU419_04940) - 1040743..1041768 (-) 1026 WP_254471104.1 outer membrane protein assembly factor BamD -
  OU419_RS04945 (OU419_04945) rluD 1041918..1042877 (+) 960 WP_254471103.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OU419_RS04950 (OU419_04950) pgeF 1042874..1043599 (+) 726 WP_254471102.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49670.01 Da        Isoelectric Point: 5.8554

>NTDB_id=761944 OU419_RS04925 WP_254471107.1 1037428..1038765(-) (pilR) [Pseudomonas triclosanedens strain ZM23]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREFLAREPFDFCLTDMRLPDGTGLDLVQYIQQRHPQTPVAM
ITAFGSLDTAVQALKAGAFDFLTKPVDLGRLRELVGTALRLRFPDAEEAPVDNRLLGDSPPMRLMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRADLAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEASVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDAGLPAATVAPEALEKLKNYRFPGNVRELENMLERAYTLCENDLIQPHDLRLAEATGGDAGSSTSLSQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=761944 OU419_RS04925 WP_254471107.1 1037428..1038765(-) (pilR) [Pseudomonas triclosanedens strain ZM23]
ATGAGTCGTCAAAAAGCCCTTATCGTCGATGACGAACCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGATACCCGCAGCGCCCGCAACGTCAAGGAAGCACGCGAATTCCTGGCCCGCGAGCCGTTCGACTTCTGCCTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCTCGACCTGGTGCAATACATCCAGCAGCGCCACCCACAGACGCCAGTGGCGATG
ATCACCGCGTTCGGCAGCCTGGACACCGCCGTACAGGCACTCAAGGCCGGCGCCTTCGACTTCCTTACCAAACCGGTCGA
CCTCGGCCGCCTGCGCGAGCTGGTCGGCACCGCGCTGCGCCTGCGCTTCCCGGACGCCGAGGAAGCACCAGTGGACAACC
GCCTGCTCGGCGACTCCCCGCCCATGCGCCTGATGCGCAACCAGATCGCCAAGCTGGCACGCAGCCAGGCGCCGGTGTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAACAGGGCCCACGCGCAGACTTGGCCTT
CGTTCCCGTCAACTGCGGGGCAATTCCGTCGGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTCACTG
GCGCCGTCGAAGACAAGCAGGGCCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGACGAAGTCGCCGACCTCCCG
CTTCCCATGCAGGTCAAGCTGCTGCGGGCGATCCAGGAAAAGGCCGTCCGCGCTGTTGGCGGCCAGCAGGAAGCCTCGGT
GGACGTGCGCATTCTCTGCGCCACCCACAAGGACCTCGCGGCGGAAGTCGCCGCTGGCCGCTTCCGCCAGGACCTGTACT
ACCGGCTGAACGTCATCGAGCTGCGTGTGCCGCCGCTGCGCGAGCGCCGCGAAGACATTCCGCTGCTCACAGAGCGCGTG
CTCAAGCGACTGGCCAGCGACGCCGGCCTGCCCGCCGCGACCGTCGCTCCCGAGGCCCTGGAGAAGCTCAAGAACTACCG
CTTCCCCGGCAATGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACGCTGTGCGAGAACGACCTGATCCAGCCGC
ACGACCTGCGCCTGGCCGAGGCCACCGGCGGCGACGCGGGCAGCTCGACCAGCCTGTCGCAGATCGACAATCTGGAAGAC
TATCTGGAAGACATCGAGCGCAAACTGATCATGCAGGCCCTTGAGGAAACCCGCTGGAACCGCACGGCGGCCGCACAGCG
CCTGGGTCTGACCTTCCGCTCGATGCGCTACCGGCTGAAGAAGCTGGGCATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

89.888

100

0.899
  pilR Acinetobacter baumannii strain A118

48.913

100

0.506