Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OU419_RS04930 Genome accession   NZ_CP113432
Coordinates   1038781..1040370 (-) Length   529 a.a.
NCBI ID   WP_254471106.1    Uniprot ID   -
Organism   Pseudomonas triclosanedens strain ZM23     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1033781..1045370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU419_RS04905 (OU419_04905) pilV 1034363..1034932 (-) 570 WP_254471111.1 type IV pilus modification protein PilV -
  OU419_RS04910 (OU419_04910) - 1034944..1035426 (-) 483 WP_254471110.1 GspH/FimT family pseudopilin -
  OU419_RS04915 (OU419_04915) - 1035577..1036089 (-) 513 WP_254471109.1 GspH/FimT family protein -
  OU419_RS04920 (OU419_04920) thiO 1036288..1037397 (+) 1110 WP_254471108.1 glycine oxidase ThiO -
  OU419_RS04925 (OU419_04925) pilR 1037428..1038765 (-) 1338 WP_254471107.1 sigma-54 dependent transcriptional regulator Regulator
  OU419_RS04930 (OU419_04930) pilS 1038781..1040370 (-) 1590 WP_254471106.1 PAS domain-containing sensor histidine kinase Regulator
  OU419_RS04935 (OU419_04935) - 1040360..1040596 (-) 237 WP_254471105.1 PP0621 family protein -
  OU419_RS04940 (OU419_04940) - 1040743..1041768 (-) 1026 WP_254471104.1 outer membrane protein assembly factor BamD -
  OU419_RS04945 (OU419_04945) rluD 1041918..1042877 (+) 960 WP_254471103.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OU419_RS04950 (OU419_04950) pgeF 1042874..1043599 (+) 726 WP_254471102.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58407.63 Da        Isoelectric Point: 8.1848

>NTDB_id=761945 OU419_RS04930 WP_254471106.1 1038781..1040370(-) (pilS) [Pseudomonas triclosanedens strain ZM23]
MGADGISLTGQGLRVLRLYHLYRLTIGLVLVLLISSNLDDHVLNLSHPDLFHVGCWAYLVINILIAVLMPAPRQLMPLFV
LAALDIIMLSGLFYAAGGIPSGIGNLMVIAVAIANILLRGRIGLLIAALAAIGLIYLTFYISLSQATALNHYVQAGGLGA
LCFASALLIQALARRQQVIENLAEQRANTVANLEELNALILQRMRTGILVLDDQQRVLLANQSATTLLGSGELTGRPLVE
HNPTLLTSLQQWQQNPALRPPSLQPNDTGPSVQPSFIPLRRGHEQHILMFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLLESESLDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFSGELRQGMREGQ
QIHVETGSGTVQTRMDPHQLTQVLTNLVQNGLRYSAKKNGVGQVWLRLFRDSETDLPVLEVLDDGPGIAAEQRGKLFEPF
FTTESKGTGLGLYISRELCESNQARLDYKTRDEGGSCFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=761945 OU419_RS04930 WP_254471106.1 1038781..1040370(-) (pilS) [Pseudomonas triclosanedens strain ZM23]
GTGGGCGCTGACGGCATCTCGCTGACAGGGCAGGGGCTACGCGTTCTCCGCCTGTACCATCTGTATCGCCTGACCATCGG
CCTGGTGCTGGTACTGCTGATTTCCAGCAACCTCGACGACCACGTCCTGAATCTTTCCCACCCCGACCTGTTCCACGTCG
GCTGCTGGGCCTACCTGGTGATCAACATCCTGATCGCCGTACTGATGCCCGCTCCTCGGCAATTGATGCCGCTATTCGTC
CTGGCGGCCCTCGACATCATCATGCTCAGCGGGCTGTTCTATGCCGCCGGAGGCATCCCCAGCGGTATCGGCAACCTGAT
GGTGATCGCGGTCGCCATCGCCAACATTCTCTTGCGCGGGCGAATCGGATTGCTGATCGCCGCGCTCGCCGCAATCGGTC
TGATCTACCTGACTTTCTATATCAGCCTGAGCCAGGCCACCGCCCTGAACCACTACGTACAGGCCGGCGGGCTGGGTGCC
CTGTGCTTCGCCTCGGCCCTGCTGATCCAGGCCCTGGCGCGCCGCCAGCAGGTCATCGAGAACCTCGCGGAGCAACGCGC
CAATACCGTGGCCAACCTCGAAGAACTCAATGCCCTGATCCTCCAGCGCATGCGCACCGGCATCCTGGTGCTGGATGACC
AGCAGCGCGTGCTGCTGGCCAACCAGAGCGCCACAACCCTGCTTGGCAGCGGAGAACTCACCGGCCGGCCACTGGTGGAA
CACAACCCGACACTCCTCACCAGCCTGCAGCAGTGGCAGCAGAACCCCGCCCTGCGACCGCCGAGCCTGCAACCGAACGA
CACCGGGCCGAGCGTCCAGCCCAGCTTCATCCCGCTGCGCCGCGGCCATGAGCAGCACATACTGATGTTCCTCGAAGACA
TCTCGCAGATCGCCCAGCAGGCGCAGCAGCTCAAGCTCGCGGCCCTCGGCCGACTGACCGCCGGCATCGCCCACGAAATC
CGCAACCCGCTGGGTGCCATCAGCCACGCGGCACAACTGTTACTGGAGTCCGAGAGCCTCGATGCGCCGGATCGCCGCCT
CACGCAGATCATCCAGGACCAGTCGCGACGGATGAACCTGGTTATCGAGAACGTCCTGCAATTGTCGCGCCGCCGCCAGT
CTGAGCCTCAGTTGCTCGACCTGAAGTACTGGCTGCACCGTTTCAGCGGCGAACTGCGCCAGGGCATGCGCGAAGGCCAG
CAGATCCATGTGGAAACCGGTTCAGGTACCGTGCAGACACGCATGGACCCTCACCAATTGACACAGGTGCTGACCAACCT
GGTTCAGAATGGGTTACGGTACAGCGCCAAGAAGAATGGCGTCGGTCAGGTCTGGCTGCGGCTGTTCCGCGATAGCGAGA
CCGATCTGCCTGTCCTGGAAGTGCTGGATGACGGCCCAGGCATCGCGGCGGAACAGCGGGGGAAGCTGTTCGAGCCGTTC
TTCACCACAGAAAGCAAGGGCACGGGCCTGGGGCTGTATATCTCCCGGGAGCTGTGTGAAAGCAACCAGGCGCGCCTGGA
CTACAAAACGCGTGACGAGGGCGGCAGTTGCTTCCGCATCACCTTCGCCCATCCACGCAAACAAAGCTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

71.869

98.11

0.705