Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LDM85_RS04765 Genome accession   NZ_AP024963
Coordinates   988900..989451 (-) Length   183 a.a.
NCBI ID   WP_223887273.1    Uniprot ID   -
Organism   Helicobacter pylori strain #5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 983900..994451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM85_RS04740 (OHP005_09730) ruvC 985464..985937 (-) 474 WP_001221166.1 crossover junction endodeoxyribonuclease RuvC -
  LDM85_RS04745 (OHP005_09740) - 986069..986794 (+) 726 WP_000646751.1 NYN domain-containing protein -
  LDM85_RS07865 - 987317..988875 (-) 1559 Protein_947 DUF3519 domain-containing protein -
  LDM85_RS04765 (OHP005_09770) ruvA 988900..989451 (-) 552 WP_223887273.1 Holliday junction branch migration protein RuvA Machinery gene
  LDM85_RS04770 (OHP005_09780) - 989478..991322 (-) 1845 WP_212872679.1 FapA family protein -
  LDM85_RS04775 (OHP005_09790) murJ 991415..992875 (+) 1461 WP_223887274.1 murein biosynthesis integral membrane protein MurJ -
  LDM85_RS04780 (OHP005_09800) cysS 992876..994273 (+) 1398 WP_223887275.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20127.71 Da        Isoelectric Point: 8.5032

>NTDB_id=76185 LDM85_RS04765 WP_223887273.1 988900..989451(-) (ruvA) [Helicobacter pylori strain #5]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKVRLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETGPAHNEVFLALESLGFKSAEINKV
LKTLKPHLSTEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=76185 LDM85_RS04765 WP_223887273.1 988900..989451(-) (ruvA) [Helicobacter pylori strain #5]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAGGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGCACTTCTGCTTTGCTCCAAGCGGGCCAAAAGGTGCGTTTGAAAATCTTACAAGTAATTAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAACTGGCCCTGCGCACAATGAAGTCTTTTTAGCATTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAGCAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(139-181)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

93.443

100

0.934
  ruvA Bacillus subtilis subsp. subtilis str. 168

32.836

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361

Multiple sequence alignment