Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   QMA14_RS10115 Genome accession   NZ_CP125087
Coordinates   2092752..2094833 (-) Length   693 a.a.
NCBI ID   WP_065242972.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain EL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2087752..2099833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA14_RS10110 (QMA14_10110) murI 2091930..2092721 (-) 792 WP_065242971.1 glutamate racemase -
  QMA14_RS10115 (QMA14_10115) recG 2092752..2094833 (-) 2082 WP_065242972.1 ATP-dependent DNA helicase RecG Machinery gene
  QMA14_RS10120 (QMA14_10120) spoT 2094833..2096953 (-) 2121 WP_284173906.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  QMA14_RS10125 (QMA14_10125) rpoZ 2097028..2097294 (-) 267 WP_005695622.1 DNA-directed RNA polymerase subunit omega -
  QMA14_RS10130 (QMA14_10130) gmk 2097354..2097980 (-) 627 WP_032822854.1 guanylate kinase -
  QMA14_RS10135 (QMA14_10135) gap 2098198..2099217 (+) 1020 WP_284173907.1 type I glyceraldehyde-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77757.18 Da        Isoelectric Point: 7.6311

>NTDB_id=761830 QMA14_RS10115 WP_065242972.1 2092752..2094833(-) (recG) [Haemophilus parainfluenzae strain EL1]
MSKQLLDAVPLTTLSGVGAAISDKLSRIGIHNLQDLLFHLPIRYEDRTRITPIADLRPEQYATIEGVVQTCEVAFGRRPI
LTVSLSDGTSKIMLRFFNFNAGMKNSFQIGTRVKAFGEIKRGRFMAEIHHPEYQIIRDNAPLVLEETLTPIYSTTEGLKQ
NSLRKLTDQALALLDKIQLTEILPNEFNPHPFSLKDAIRFLHRPPPDISLDILEKGQHPAQQRLIFEELLAHNLAMQKVR
LGTQQFLALPLDYQTDLKQRFLASLPFQPTNAQNRVVADIEQDLAKDYPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHANNFRRWLEPFGIDVGWLAGKVKGKARQAELEKIKSGAVQMVVGTHALFQEEVEFADLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVISEERRDEIVARVKNACI
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLKIGLVHGRMKPQEKQDIMAAFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAEFKVANLMRDRKMIPTVQHYAKALIVKYPDVAESLIRRWLNNREIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=761830 QMA14_RS10115 WP_065242972.1 2092752..2094833(-) (recG) [Haemophilus parainfluenzae strain EL1]
ATGAGCAAACAACTTCTTGATGCCGTTCCTTTAACTACTTTGTCTGGTGTGGGAGCGGCAATTTCCGATAAATTAAGCCG
TATTGGAATTCATAATCTCCAAGACCTGCTTTTTCATTTACCTATCCGTTATGAAGATCGCACGAGAATTACGCCTATTG
CCGATCTTCGCCCTGAACAATATGCCACCATTGAAGGTGTTGTCCAAACCTGTGAAGTTGCCTTTGGGCGCCGTCCTATT
TTAACTGTAAGTCTTTCTGATGGAACGAGCAAAATTATGCTTCGTTTCTTCAATTTTAATGCAGGGATGAAAAATAGTTT
TCAGATTGGTACGCGCGTTAAAGCGTTTGGTGAAATTAAACGCGGGCGCTTTATGGCGGAAATTCATCATCCTGAGTATC
AAATTATACGGGATAATGCGCCATTAGTTTTAGAGGAAACGCTCACACCAATTTATTCCACAACGGAAGGTTTAAAACAA
AATTCATTACGTAAGCTAACCGATCAAGCATTGGCTTTACTCGATAAAATCCAATTAACGGAAATTTTACCTAATGAATT
TAATCCGCATCCTTTTAGCTTAAAGGATGCTATTCGATTTTTGCATCGTCCACCGCCAGATATATCATTAGATATTTTGG
AGAAAGGACAGCATCCGGCACAACAACGACTTATCTTTGAAGAGCTTCTTGCACATAATCTTGCGATGCAAAAAGTGCGG
TTGGGTACGCAGCAGTTTTTAGCGTTGCCATTGGATTATCAAACTGATTTGAAACAACGTTTTCTTGCATCTTTGCCGTT
TCAACCAACCAATGCCCAAAATAGAGTGGTGGCCGATATTGAACAGGATTTAGCAAAAGATTATCCGATGATGCGGCTTG
TTCAAGGGGATGTAGGTTCGGGGAAAACATTAGTGGCAGCCTTAGCGGCCTTATTAGCGATTGATAATGGCAAACAAGTG
GCTTTAATGGCGCCAACAGAGATTTTAGCGGAACAGCATGCAAATAATTTTCGACGTTGGTTAGAGCCTTTTGGTATTGA
CGTCGGCTGGTTAGCGGGTAAGGTGAAAGGGAAAGCTCGCCAAGCTGAATTGGAAAAAATTAAGTCTGGTGCGGTACAAA
TGGTGGTGGGTACACATGCTTTATTCCAAGAAGAAGTAGAATTTGCCGATTTAGCCTTGGTGATTATTGATGAACAACAT
CGTTTTGGTGTGCATCAACGTTTAATGCTGCGAGAAAAAGGCGAAAAAGCAGGATTTTATCCCCATCAACTGATTATGAC
AGCTACGCCAATCCCGAGAACATTAGCAATGACGGTTTATGCCGATCTCGATACGTCTATTATCGATGAATTGCCTCCAG
GTAGAACGCCGATTACGACAGTTGTTATTTCTGAAGAACGCCGTGATGAAATCGTTGCTCGAGTCAAAAATGCCTGTATT
AATGAAAAACGTCAGGCTTATTGGGTTTGTACCTTGATTGATGAGTCTGAAGTGCTAGAAGCGCAAGCAGCCGAGGCCAT
TTGGGAAGATTTAACGAAAGCGCTGCCGATGCTTAAAATTGGTCTTGTACATGGGAGAATGAAACCGCAAGAAAAACAAG
ATATTATGGCAGCCTTTAAAAATGCAGAACTCGATTTGCTTGTGGCCACAACTGTAATCGAAGTGGGCGTAGATGTGCCG
AATGCCAGTCTAATGATCATTGAAAATGCTGAGCGTTTGGGCTTATCACAACTCCATCAGTTACGTGGGCGAGTAGGGCG
TGGCAGTACGGCTTCTTTTTGTGTCTTAATGTATAAACCGCCGTTAGGTAAAGTCTCGCAAAAACGTTTGCAGGTATTAC
GTGATAGCCAAGATGGCTTTGTGATTTCAGAGAAAGATTTAGAAATTCGCGGACCTGGTGAAGTGTTGGGTACCAAGCAG
ACGGGTATCGCTGAATTTAAGGTGGCGAATTTAATGCGCGATCGTAAAATGATCCCAACCGTTCAACATTATGCTAAAGC
ATTAATTGTGAAATACCCGGATGTGGCAGAAAGTTTAATTCGTCGTTGGCTAAATAATCGAGAAATTTATTCGAATGCCT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(292-405)

Helicase conserved C-terminal domain (Helicase_C)

(481-588)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.889

97.403

0.476
  recG/mmsA Streptococcus pneumoniae R6

40.52

94.372

0.382
  recG/mmsA Streptococcus pneumoniae R36A

40.52

94.372

0.382
  recG Bacillus subtilis subsp. subtilis str. 168

39.079

97.114

0.38