Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   G6L90_RS07230 Genome accession   NZ_CP124967
Coordinates   1452447..1454552 (+) Length   701 a.a.
NCBI ID   WP_031233642.1    Uniprot ID   A0ABD5LHH8
Organism   Agrobacterium tumefaciens strain O54/95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1447447..1459552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L90_RS07215 (G6L90_07215) - 1447955..1448296 (-) 342 WP_020809531.1 hypothetical protein -
  G6L90_RS07220 (G6L90_07220) mfd 1448446..1451943 (-) 3498 WP_129564988.1 transcription-repair coupling factor -
  G6L90_RS07225 (G6L90_07225) - 1451947..1452258 (-) 312 WP_003508031.1 succinate dehydrogenase assembly factor 2 -
  G6L90_RS07230 (G6L90_07230) recG 1452447..1454552 (+) 2106 WP_031233642.1 ATP-dependent DNA helicase RecG Machinery gene
  G6L90_RS07235 (G6L90_07235) - 1454565..1454837 (+) 273 WP_129564989.1 hypothetical protein -
  G6L90_RS07240 (G6L90_07240) - 1454892..1455149 (+) 258 WP_003508026.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
  G6L90_RS07245 (G6L90_07245) - 1455146..1455529 (+) 384 WP_003508024.1 type II toxin-antitoxin system VapC family toxin -
  G6L90_RS07250 (G6L90_07250) - 1455533..1456201 (-) 669 WP_003508022.1 DUF502 domain-containing protein -
  G6L90_RS07255 (G6L90_07255) - 1456215..1456718 (-) 504 WP_060726324.1 N-acetyltransferase -
  G6L90_RS07260 (G6L90_07260) glmS 1456715..1458541 (-) 1827 WP_099085266.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76446.10 Da        Isoelectric Point: 7.2726

>NTDB_id=761756 G6L90_RS07230 WP_031233642.1 1452447..1454552(+) (recG) [Agrobacterium tumefaciens strain O54/95]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PPPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIEPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDVAAKILSQLPFSLTPSQSAAVKDILTDMAGEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHYATISKLAQAAGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRSAL
KDGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKSGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGNALRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=761756 G6L90_RS07230 WP_031233642.1 1452447..1454552(+) (recG) [Agrobacterium tumefaciens strain O54/95]
ATGCGCCCGGCCATTCTCGATCCGCTGTTTGCTTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTTGCCGATCTTCT
GGCCAAGCTCTTGAGCCGGGAAAACGCCGACGACACCCGCGTGATCGATCTCCTGTTCCACGCGCCGTCCAACGTCATCG
ACCGCCGCAACCGCCCCGGCATCGCGCTTGCCGCACCCGGCGCCATTGTCACCATTCAGGGACGAGTGGACCGCCACCAG
CCGCCACCGCCGGGAAACCGCTCCGCGCCCTATCGCGTCTTCCTGCATGACGAGACCGGCGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGCGACTGGCTGTCCAAGGCGCTGCCCGTCGATGAGGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ATGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAACTTTCCGAGGCCGAAAACCTGCCACTTGTGGAAGCCGTT
TATCCCATGACCGCCGGACTGTCCCCCAAGGTGCTGCGGCGGGCGATCGAAGGCGGGCTATCGAAGCTGCCGGTCTTTCC
GGAGTGGATCGATGAAACGCTGAAGACCCGGCAAGGCTTCGGCGATGTCGCTTCGAGCTTCCGTGAGTTGCACGACCCGC
GTGACAGCGCCGATATCGAGCCGCAGGCTCCAGCGCGCAGGCGGCTTGCCTATGACGAATTCCTCGCCGGGCAGCTGTCA
CTCGCATTGGTGCGCCAGCGGCTGCGCAAAGTGGCGGGCCAGCCGATCCGCGCCAAGGGTGATGTCGCCGCAAAAATCCT
GTCGCAACTGCCCTTCTCGCTGACACCGAGCCAGAGCGCTGCGGTGAAGGATATTCTGACTGACATGGCCGGCGAAGACC
GCATGTTGCGGCTGCTGCAGGGCGATGTCGGCGCAGGCAAGACGCTGGTGGCGCTGATGGCGATGGCAACGGCCGTGGAG
GCAGGCGGACAGGCGGTGCTGATGGCCCCGACCGAAATCCTCGCCCGGCAGCACTACGCCACCATTTCCAAGCTCGCTCA
GGCCGCGGGCATTACCGTCGAAGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGGCGCGAGATCGAGGAGCGCGTCGCAT
CAGGTGAAGCGCAGATCGTCATCGGCACCCATGCGTTGTTTCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGACGAACAGCACCGTTTCGGCGTTCATCAACGCCTGCGCCTCACCGCCAAGGGCATCACCCCGCATATGCTGGTCAT
GACTGCCACGCCCATTCCGCGCACGCTGGTTCTGGCCGCCTTCGGCGACATGGATGTCTCCAAGCTCACCGAAAAGCCGG
CCGGCCGCAAGCCTATCCAGACGGTAACGATCCCCACCGAACGGATCGGCGACATTGTCGAGCGGCTGCGTTCCGCGCTG
AAGGATGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAAGAAACGGAAGAATCCGACCTTATGTCGGCGGAGGAGCG
GCACGCAGTTCTCTCGCAGATGCTGGGCGCCAATATCGGCCTCATCCATGGCCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTCGCCTTCAAGAGCGGTGAAACCCGGCTGTTGGTGGCAACGACGGTGGTGGAAGTGGGCGTCGATGTGCCTGAC
GCGACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTTGCCCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGGCTTTCCATCCTGCGTG
ACAGCGAGGATGGCTTCCTGATCGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAGTTGCTCGGCACCCGCCAGTCC
GGCACGCCGGGATTCCGCATCGCCAGCCTGGAAGCCCACGCCGACCTTCTGGAAATCGCCCGCAAGGACGCGGCCTACGT
CATCGAGCGCGACCCCGAACTGACGGGCCCGCGCGGCAATGCGCTGCGCACCCTGCTCTACCTGCACCGCCGCGACGAAG
CGATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-682)

DEAD/DEAH box helicase (DEAD)

(275-432)

Helicase conserved C-terminal domain (Helicase_C)

(476-587)

RecG wedge domain (RecG_wedge)

(18-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD5LHH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.018

94.722

0.398
  recG/mmsA Streptococcus pneumoniae R6

39.528

96.719

0.382
  recG/mmsA Streptococcus pneumoniae R36A

39.528

96.719

0.382
  recG Bacillus subtilis subsp. subtilis str. 168

38.856

97.29

0.378