Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   G6L16_RS06915 Genome accession   NZ_CP124963
Coordinates   1399047..1401152 (+) Length   701 a.a.
NCBI ID   WP_174002347.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain AF1/95     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1394047..1406152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L16_RS06900 (G6L16_006900) - 1394458..1394805 (-) 348 WP_236772350.1 hypothetical protein -
  G6L16_RS06905 (G6L16_006905) mfd 1395047..1398544 (-) 3498 WP_174001896.1 transcription-repair coupling factor -
  G6L16_RS06910 (G6L16_006910) - 1398548..1398859 (-) 312 WP_003515739.1 succinate dehydrogenase assembly factor 2 -
  G6L16_RS06915 (G6L16_006915) recG 1399047..1401152 (+) 2106 WP_174002347.1 ATP-dependent DNA helicase RecG Machinery gene
  G6L16_RS06920 (G6L16_006920) - 1401165..1401437 (+) 273 WP_097102889.1 hypothetical protein -
  G6L16_RS06925 (G6L16_006925) - 1401463..1401753 (-) 291 WP_174001897.1 type II toxin-antitoxin system RelE/ParE family toxin -
  G6L16_RS06930 (G6L16_006930) - 1401750..1401995 (-) 246 WP_077982071.1 CopG family ribbon-helix-helix protein -
  G6L16_RS06935 (G6L16_006935) - 1402110..1402778 (-) 669 WP_003515749.1 DUF502 domain-containing protein -
  G6L16_RS06940 (G6L16_006940) - 1402792..1403295 (-) 504 WP_174001898.1 GNAT family N-acetyltransferase -
  G6L16_RS06945 (G6L16_006945) glmS 1403292..1405118 (-) 1827 WP_174001899.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76564.15 Da        Isoelectric Point: 6.9838

>NTDB_id=761720 G6L16_RS06915 WP_174002347.1 1399047..1401152(+) (recG) [Agrobacterium tumefaciens strain AF1/95]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAVEGGLSKLPVFPEWIDEALKTRQGFGDVASSFRELHDPRDSADIEPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFSTISKLANAEGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYRNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGASIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=761720 G6L16_RS06915 WP_174002347.1 1399047..1401152(+) (recG) [Agrobacterium tumefaciens strain AF1/95]
ATGCGTCCCGCCATTCTCGATCCGCTATTTGCTTCCGTCTCCACGCTTGCCGGTGTGGGGCCGAAGCTTGCCGACCTTCT
GGCCAAACTGCTGAGCCGGGAAAATGCCGACGACACCCGCGTGATCGATCTTCTGTTCCACGCACCATCAAACGTCATCG
ACCGGCGCAACCGCCCGGGCATCGCGCTTGCCGCTCCCGGCGCCATTGTCACCATTCAGGGACGCGTCGACCGGCATCAG
CCAGCTCCACCAGGCAATCGTTCCGCACCCTACCGTGTTTTCCTGCATGACGAGACCGGGGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGAGACTGGCTTTCCAAGGCCTTGCCCGTCGATGAAGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCAGATTTCATGGTGAAGCTTTCCGAGGCCGAGAACCTGCCCCTGGTCGAAGCCGTT
TATCCCATGACAGCCGGGCTGTCTCCGAAGGTGTTGCGGCGGGCAGTTGAAGGCGGGCTTTCGAAACTGCCGGTCTTTCC
CGAATGGATCGACGAGGCCCTGAAGACCCGTCAGGGATTCGGCGACGTGGCATCGAGCTTCCGTGAGTTGCACGACCCAC
GGGACAGCGCCGATATAGAGCCGCAGGCCCCGGCGCGTAGACGGCTTGCCTATGACGAATTCCTCGCCGGACAATTATCG
CTGGCGCTGGTGCGGCAAAGACTGCGCAAGGTCGCGGGCCAGCCGATCCGCGCCAAGGGGGACATTGCTGCAAAAATCCT
GTCGCAACTGCCCTTCTCCCTGACGCCGAGCCAGAATGCCTCGGTGAAAGATATCCTGACCGATATGGCCAGCGAGGACC
GTATGTTGCGGCTGTTGCAGGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCTATGGCAACCGCCGTCGAG
GCCGGCGGACAGGCCGTGCTGATGGCCCCGACCGAAATTCTTGCCCGGCAGCATTTCTCCACCATCTCCAAACTCGCCAA
TGCTGAGGGCATCACGGTTGAGGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGTCGCGAGATCGAAGAACGTGTGGCCT
CCGGTGAGGCACAGATCGTCATCGGCACCCACGCGCTGTTCCAGGACAGCGTGAGTTACAGGAACCTCGTGCTGGCCGTA
GTGGATGAGCAGCACCGTTTCGGCGTACACCAGCGCCTGCGTCTCACCGCCAAGGGTATCACGCCGCATATGCTTGTTAT
GACCGCCACGCCCATTCCGCGCACGCTGGTGCTGGCCGCATTCGGCGACATGGATGTGTCGAAACTCACCGAAAAACCGG
CCGGCCGAAAACCCATCCAGACCGTGACGATCCCCACAGAGCGCATCGGCGATATCGTCGAGCGGCTGCGCGCCGCGCTG
AAGGAGGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAGACGGAAGAGTCGGACCTGATGTCGGCTGAGGAACG
CCATGCGGTTCTCTCGCAGATGCTCGGAGCCAGTATCGGTCTCATCCATGGGCGCATGAGCGGCCCGGAGAAGGACGCCG
CCATGCTGGCTTTCAAGAACGGCGAAACCCGGCTGCTGGTGGCAACGACGGTGGTGGAAGTGGGTGTCGACGTTCCGGAC
GCCACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTTGCCCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTACAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATTGCGGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAACTCCTCGGCACCCGCCAGTCC
GGCACCCCGGGCTTCCGCATCGCCAGCCTCGAAGCCCATGCCGACCTCCTGGAAATCGCCCGCAAAGACGCCGCCTATGT
CATCGAGCGCGACCCCGAATTGACCGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CCATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(275-432)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

RecG wedge domain (RecG_wedge)

(18-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

41.867

94.722

0.397
  recG/mmsA Streptococcus pneumoniae R6

40.588

97.004

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40.588

97.004

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

38.372

98.146

0.377