Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   OTB22_RS10900 Genome accession   NZ_CP113267
Coordinates   2127613..2128371 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2122613..2133371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTB22_RS10870 (OTB22_10875) comE 2123210..2123962 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  OTB22_RS10875 (OTB22_10880) comD/comD1 2123959..2125284 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  OTB22_RS10880 (OTB22_10885) comC/comC1 2125305..2125430 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  OTB22_RS10890 (OTB22_10895) rlmH 2125712..2126191 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  OTB22_RS10895 (OTB22_10900) htrA 2126374..2127555 (+) 1182 WP_000681601.1 S1C family serine protease Regulator
  OTB22_RS10900 (OTB22_10905) spo0J 2127613..2128371 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator
  OTB22_RS10905 (OTB22_10910) dnaA 2128584..2129945 (+) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  OTB22_RS10910 (OTB22_10915) dnaN 2130104..2131240 (+) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  OTB22_RS10915 (OTB22_10920) - 2131305..2131499 (+) 195 WP_000285194.1 DUF951 domain-containing protein -
  OTB22_RS10920 (OTB22_10925) ychF 2131583..2132698 (+) 1116 WP_001218707.1 redox-regulated ATPase YchF -
  OTB22_RS10925 (OTB22_10930) pth 2132769..2133338 (+) 570 WP_000163933.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=761530 OTB22_RS10900 WP_000410383.1 2127613..2128371(+) (spo0J) [Streptococcus pneumoniae strain BC2]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=761530 OTB22_RS10900 WP_000410383.1 2127613..2128371(+) (spo0J) [Streptococcus pneumoniae strain BC2]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGTTTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504