Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   OTB22_RS09780 Genome accession   NZ_CP113267
Coordinates   1906268..1907221 (-) Length   317 a.a.
NCBI ID   WP_050233486.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1901268..1912221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTB22_RS09750 (OTB22_09755) - 1902029..1902652 (-) 624 WP_000932657.1 hypothetical protein -
  OTB22_RS09755 (OTB22_09760) jag 1902703..1903689 (-) 987 WP_000260027.1 RNA-binding cell elongation regulator Jag/EloR -
  OTB22_RS09760 (OTB22_09765) - 1903708..1904532 (-) 825 WP_001832473.1 membrane protein insertase YidC -
  OTB22_RS09765 (OTB22_09770) rnpA 1904507..1904878 (-) 372 WP_000739246.1 ribonuclease P protein component -
  OTB22_RS09770 (OTB22_09775) - 1904895..1905026 (-) 132 WP_000768904.1 hypothetical protein -
  OTB22_RS09775 (OTB22_09780) - 1905027..1906217 (-) 1191 WP_050245357.1 acetate kinase -
  OTB22_RS09780 (OTB22_09785) comYH 1906268..1907221 (-) 954 WP_050233486.1 class I SAM-dependent methyltransferase Machinery gene
  OTB22_RS09785 (OTB22_09790) - 1907282..1907876 (-) 595 Protein_1908 class I SAM-dependent methyltransferase -
  OTB22_RS09790 (OTB22_09795) comGG/cglG 1908013..1908426 (-) 414 WP_000265620.1 competence type IV pilus minor pilin ComGG Machinery gene
  OTB22_RS09795 (OTB22_09800) comGF/cglF 1908404..1908865 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  OTB22_RS09800 (OTB22_09805) comGE/cglE 1908828..1909130 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  OTB22_RS09805 (OTB22_09810) comGD/cglD 1909093..1909497 (-) 405 WP_000588013.1 competence type IV pilus minor pilin ComGD Machinery gene
  OTB22_RS09810 (OTB22_09815) comGC/cglC 1909490..1909816 (-) 327 WP_000738630.1 comG operon protein ComGC Machinery gene
  OTB22_RS09815 (OTB22_09820) comGB/cglB 1909818..1910834 (-) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  OTB22_RS09820 (OTB22_09825) comGA/cglA/cilD 1910782..1911723 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  OTB22_RS09825 (OTB22_09830) - 1911799..1912164 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35646.83 Da        Isoelectric Point: 4.2585

>NTDB_id=761510 OTB22_RS09780 WP_050233486.1 1906268..1907221(-) (comYH) [Streptococcus pneumoniae strain BC2]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFTEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SNLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEVAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=761510 OTB22_RS09780 WP_050233486.1 1906268..1907221(-) (comYH) [Streptococcus pneumoniae strain BC2]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACGCCAGATGCTATTGCCTTACTTTTGGTATTTATTGTGGAAGAGTTGTTTAC
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTAATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAGTAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539