Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QLG17_RS17510 Genome accession   NZ_CP124819
Coordinates   3517628..3518218 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain C325     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3512628..3523218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLG17_RS17485 (QLG17_17485) ilvN 3513921..3514211 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  QLG17_RS17490 (QLG17_17490) - 3514474..3514632 (+) 159 WP_180192624.1 hypothetical protein -
  QLG17_RS17495 (QLG17_17495) - 3514704..3515126 (+) 423 WP_180192625.1 hypothetical protein -
  QLG17_RS17500 (QLG17_17500) - 3515274..3515755 (+) 482 Protein_3416 hypothetical protein -
  QLG17_RS17505 (QLG17_17505) - 3516363..3517466 (+) 1104 WP_001419235.1 hypothetical protein -
  QLG17_RS17510 (QLG17_17510) letA 3517628..3518218 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  QLG17_RS17515 (QLG17_17515) uhpB 3518218..3519720 (+) 1503 WP_001358729.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  QLG17_RS17520 (QLG17_17520) uhpC 3519730..3521049 (+) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  QLG17_RS17525 (QLG17_17525) uhpT 3521187..3522578 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=761426 QLG17_RS17510 WP_000633668.1 3517628..3518218(+) (letA) [Escherichia coli strain C325]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=761426 QLG17_RS17510 WP_000633668.1 3517628..3518218(+) (letA) [Escherichia coli strain C325]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGTGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACAGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCACTAACCAAACGTGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGTATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378