Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | OUY23_RS05595 | Genome accession | NZ_CP113246 |
| Coordinates | 1215948..1216820 (-) | Length | 290 a.a. |
| NCBI ID | WP_017148550.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain SMC4386 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1210948..1221820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OUY23_RS05550 (OUY23_05550) | - | 1211809..1211979 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| OUY23_RS05555 (OUY23_05555) | - | 1212005..1212454 (-) | 450 | WP_003161439.1 | MOSC domain-containing protein | - |
| OUY23_RS05560 (OUY23_05560) | - | 1212451..1213080 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| OUY23_RS05565 (OUY23_05565) | - | 1213213..1213638 (+) | 426 | WP_016562341.1 | GNAT family N-acetyltransferase | - |
| OUY23_RS05570 (OUY23_05570) | - | 1213635..1214105 (+) | 471 | WP_023103507.1 | hypothetical protein | - |
| OUY23_RS05575 (OUY23_05575) | - | 1214102..1214791 (+) | 690 | WP_003094662.1 | energy-coupling factor ABC transporter permease | - |
| OUY23_RS05580 (OUY23_05580) | - | 1214897..1215106 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| OUY23_RS05585 (OUY23_05585) | yacG | 1215143..1215343 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| OUY23_RS05590 (OUY23_05590) | coaE | 1215340..1215951 (-) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| OUY23_RS05595 (OUY23_05595) | pilD | 1215948..1216820 (-) | 873 | WP_017148550.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| OUY23_RS05600 (OUY23_05600) | pilC | 1216823..1218040 (-) | 1218 | WP_023103506.1 | type II secretion system F family protein | Machinery gene |
| OUY23_RS05605 (OUY23_05605) | pilB | 1218044..1219747 (-) | 1704 | WP_023100230.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OUY23_RS05615 (OUY23_05615) | pilE | 1219974..1220510 (+) | 537 | WP_025921208.1 | pilin | Machinery gene |
| OUY23_RS05620 (OUY23_05620) | tfpZ | 1220575..1221312 (+) | 738 | WP_023110409.1 | TfpX/TfpZ family type IV pilin accessory protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31888.88 Da Isoelectric Point: 7.7068
>NTDB_id=761132 OUY23_RS05595 WP_017148550.1 1215948..1216820(-) (pilD) [Pseudomonas aeruginosa strain SMC4386]
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MQLTDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=761132 OUY23_RS05595 WP_017148550.1 1215948..1216820(-) (pilD) [Pseudomonas aeruginosa strain SMC4386]
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCAACTCACAGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
53.791 |
95.517 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
51.071 |
96.552 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
51.071 |
96.552 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.571 |
96.552 |
0.469 |