Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OOK74_RS10185 Genome accession   NZ_CP113241
Coordinates   2216245..2216877 (+) Length   210 a.a.
NCBI ID   WP_000242749.1    Uniprot ID   A0A6G8D3R0
Organism   Vibrio sp. gvc     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2211245..2221877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS10165 slyD 2211926..2212528 (-) 603 WP_166014250.1 peptidylprolyl isomerase -
  OOK74_RS10170 - 2212765..2214690 (+) 1926 WP_278182723.1 ABC transporter ATP-binding protein -
  OOK74_RS10175 - 2214829..2215038 (+) 210 WP_278182724.1 YheU family protein -
  OOK74_RS10180 - 2215133..2216002 (+) 870 WP_278182725.1 phosphoribulokinase -
  OOK74_RS10185 crp 2216245..2216877 (+) 633 WP_000242749.1 cAMP-activated global transcriptional regulator CRP Regulator
  OOK74_RS10190 - 2216962..2218176 (-) 1215 WP_278182726.1 aspartate aminotransferase family protein -
  OOK74_RS10195 - 2218398..2218991 (-) 594 WP_274722634.1 aminodeoxychorismate/anthranilate synthase component II -
  OOK74_RS10200 - 2219393..2221699 (+) 2307 WP_278182727.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23635.45 Da        Isoelectric Point: 8.2784

>NTDB_id=761111 OOK74_RS10185 WP_000242749.1 2216245..2216877(+) (crp) [Vibrio sp. gvc]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=761111 OOK74_RS10185 WP_000242749.1 2216245..2216877(+) (crp) [Vibrio sp. gvc]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACACTGATCCACGCGGGTGAGAAAGCGGAAACGCTGTATTACATCGTTAAAGGTTCAGTCGCGGTACTGATTAAAG
ATGAAGAAGGTAAAGAGATGATCCTCTCTTACCTAAACCAAGGTGATTTCATCGGTGAACTGGGCCTCTTTGAAGAAGGC
CAAGAGCGTACCGCTTGGGTTCGAGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
TCAGGTTAACCCTGATATTTTGATGCGCCTTTCAGGTCAAATGGCTCGCCGTCTGCAAGTCACTAGCCAAAAAGTGGGTG
ACTTGGCGTTCTTAGACGTCACCGGTCGGATTGCCCAAACTCTGCTCAACCTAGCACGTCAACCTGATGCTATGACCCAC
CCTGATGGCATGCAGATCAAAATCACCCGTCAAGAGATTGGTCAAATTGTTGGCTGTTCACGTGAAACCGTTGGCCGCAT
CCTCAAGATGCTAGAAGAGCAAAATCTGATCTCTGCTCACGGTAAAACTATCGTGGTGTACGGTACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8D3R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

100

100

1
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467