Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   OOK74_RS07160 Genome accession   NZ_CP113241
Coordinates   1537287..1539482 (-) Length   731 a.a.
NCBI ID   WP_274721552.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1532287..1544482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS07140 kdsB 1533580..1534338 (-) 759 WP_278182490.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OOK74_RS07145 - 1534338..1534517 (-) 180 WP_274721356.1 Trm112 family protein -
  OOK74_RS07150 lpxK 1534498..1535505 (-) 1008 WP_278182491.1 tetraacyldisaccharide 4'-kinase -
  OOK74_RS07155 msbA 1535508..1537256 (-) 1749 WP_274721354.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  OOK74_RS07160 comEC 1537287..1539482 (-) 2196 WP_274721552.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OOK74_RS07165 - 1539539..1540096 (+) 558 WP_274721353.1 DUF2062 domain-containing protein -
  OOK74_RS07170 lolE 1540245..1541486 (-) 1242 WP_274721352.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  OOK74_RS07175 lolD 1541490..1542176 (-) 687 WP_278182492.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OOK74_RS07180 lolC 1542169..1543377 (-) 1209 WP_278182493.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  OOK74_RS07185 - 1543553..1544125 (+) 573 WP_277205998.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 731 a.a.        Molecular weight: 83285.37 Da        Isoelectric Point: 9.2895

>NTDB_id=761101 OOK74_RS07160 WP_274721552.1 1537287..1539482(-) (comEC) [Vibrio sp. gvc]
MLSAPYWPWMPTWGWAWFCLMICGLCIYYRICRQWLGLGLAILTIVLHGNLIRDQSNLLYQAGPDISIKGRVDSFFTQTR
YAYEGLILIHQVNGQRLHRWHQPRVRLTAPLPLQPNDQFEFSVTLKPVIGRLNQVGFDLEAHSMAQSVLARASVKPNTSY
QIIQRGDVRSAWLTQLTALTDASRFQGLILALTFGERKAIEESEWQALRNSGLIHLVAISGLHIGIAFSLGYVLGAGLMR
WHVKLIWSPFILGGLLALLYAWLAGFTLPTQRALIMCLLNVALVVLALPLSAYQRILLTLAVVLFWSPFASLSNSFWMSF
LAVAVVLYQLASQNQRQAKWQRLLWAQISLVCLMAPVTAYFFGGLSITAVLYNLLFIPWFSLVIVPVLFFGLLLMVALPS
WAPGYWPWVDWTFMPLEWALQFAEVGWLVVPKQVQGIVIGIVAVSLLYRIISRQACALILIMIGLWWWFPGIKPLWRIDV
LDVGHGLAIMIEQNQRAIIYDTGSSWPTGSYAHSVIEPLLQQRGIQQLDGLILSHLDNDHAGDWQGLASRWQPRWIRSSQ
HGVQFEPCVRGVSWQWQSLEFNVLWPPQRVSRAYNPHSCVIRVSDTQSQHSVLLSGDVTALGEWLLARDGVVLQSDVMLV
PHHGSKTSSTAEFIAQVQPQLAIASLAKDNRWNLPHPQVVARYQQQQVQWLDTGQMGQISLFFYPDQLDWLAQRRRYWEP
WYRQMLRKGVE

Nucleotide


Download         Length: 2196 bp        

>NTDB_id=761101 OOK74_RS07160 WP_274721552.1 1537287..1539482(-) (comEC) [Vibrio sp. gvc]
ATGCTCTCTGCACCATATTGGCCATGGATGCCAACGTGGGGCTGGGCGTGGTTTTGCCTCATGATATGTGGCCTGTGCAT
CTATTACCGAATTTGCCGTCAATGGCTTGGTTTAGGATTGGCCATCCTGACCATAGTGCTACATGGCAATCTTATACGAG
ATCAATCCAACCTGCTCTATCAAGCAGGCCCGGATATTAGCATAAAAGGCCGAGTTGACAGCTTTTTTACACAAACTCGT
TACGCCTATGAGGGGTTGATCTTAATTCATCAGGTCAATGGTCAAAGATTGCACCGATGGCATCAACCGCGCGTGCGTTT
AACCGCGCCATTACCGTTACAGCCCAATGATCAATTCGAATTTTCCGTAACCTTGAAACCGGTGATTGGGCGACTTAATC
AAGTCGGTTTTGATTTAGAAGCGCATTCGATGGCGCAATCGGTCTTAGCTCGCGCCAGTGTTAAACCCAATACCAGCTAC
CAAATTATCCAGCGGGGAGATGTCCGGTCTGCTTGGCTAACCCAATTGACCGCATTGACTGATGCTAGCCGCTTCCAAGG
CTTGATCTTAGCGCTGACCTTTGGTGAGCGTAAAGCGATCGAGGAATCCGAGTGGCAAGCACTGCGCAACAGCGGTTTGA
TTCATTTAGTGGCTATTTCTGGCTTACATATTGGTATCGCATTCAGCTTAGGCTATGTGCTGGGGGCGGGTTTGATGCGT
TGGCATGTCAAGCTGATCTGGTCGCCTTTTATCCTCGGTGGCTTATTAGCACTGCTGTATGCTTGGTTGGCCGGATTCAC
GCTACCCACTCAGCGTGCGCTGATCATGTGTCTGCTCAACGTGGCGTTGGTGGTATTGGCTTTGCCATTGTCGGCGTATC
AGCGCATTTTACTCACCCTCGCGGTGGTGCTGTTTTGGTCGCCGTTCGCTTCGCTCTCCAATAGCTTTTGGATGTCATTT
CTCGCGGTTGCAGTGGTGCTTTATCAGCTCGCCAGCCAAAATCAACGTCAAGCCAAGTGGCAGAGATTATTGTGGGCGCA
AATCTCTCTGGTCTGTTTAATGGCGCCGGTCACGGCGTATTTTTTTGGTGGATTGAGCATTACGGCTGTGCTGTACAATT
TGTTGTTTATCCCGTGGTTTTCATTGGTGATTGTACCGGTGCTATTCTTCGGTCTGCTACTGATGGTGGCGCTTCCGAGT
TGGGCACCTGGCTACTGGCCATGGGTGGATTGGACTTTTATGCCACTGGAGTGGGCGCTGCAATTTGCTGAAGTCGGTTG
GTTGGTGGTACCCAAGCAGGTACAAGGTATCGTGATCGGAATTGTGGCGGTGAGTTTGTTGTATCGAATCATTAGCCGCC
AAGCGTGCGCGTTGATATTGATCATGATTGGGTTATGGTGGTGGTTTCCCGGCATCAAGCCGCTTTGGCGAATCGATGTG
CTGGATGTTGGGCATGGCTTGGCGATCATGATTGAGCAGAATCAGCGGGCGATTATCTACGATACTGGCAGCAGTTGGCC
GACTGGAAGCTACGCTCACAGCGTGATTGAGCCGCTGTTACAGCAGCGTGGGATTCAGCAATTAGATGGGCTGATTTTAA
GTCATCTGGATAATGATCATGCGGGAGATTGGCAAGGATTGGCTAGCCGCTGGCAGCCGCGTTGGATCCGTAGTAGTCAA
CACGGTGTGCAATTTGAGCCTTGTGTCCGAGGTGTGAGTTGGCAGTGGCAGTCACTTGAATTTAATGTGTTATGGCCGCC
GCAACGGGTGAGCCGAGCTTATAACCCGCACTCCTGCGTGATCCGCGTCAGCGATACACAATCCCAGCATTCGGTGTTGT
TATCCGGTGATGTCACCGCGCTGGGTGAGTGGTTACTCGCCCGAGATGGCGTTGTATTACAAAGTGATGTGATGCTAGTG
CCGCATCATGGCAGTAAAACCTCATCGACCGCCGAGTTTATAGCCCAAGTGCAACCCCAGTTGGCGATCGCTTCTCTGGC
CAAAGATAACCGCTGGAACTTGCCTCATCCACAGGTGGTTGCACGTTATCAGCAGCAACAAGTGCAGTGGCTAGATACCG
GACAAATGGGGCAGATTTCGCTATTTTTCTATCCGGATCAGCTTGATTGGTTGGCTCAGCGGCGGCGCTACTGGGAGCCT
TGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(192-448)

Domain of unknown function (DUF4131) (DUF4131)

(8-156)

Metallo-beta-lactamase superfamily (Lactamase_B)

(483-662)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

77.018

100

0.77
  comEC Vibrio parahaemolyticus RIMD 2210633

41.914

100

0.425
  comEC Vibrio campbellii strain DS40M4

41.248

100

0.416