Detailed information NTG0760970

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OSZ60_RS14620
• Genome accession: NZ_CP113230
• Coordinates: 3055964..3056836 (-)
• Length: 290 a.a.
• NCBI ID: WP_003107301.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain BIAI 160
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3050964..3061836

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OSZ60_RS14575 (OSZ60_14575)	-	3051825..3051995 (-)	171	WP_003094672.1	DUF3094 family protein	-
OSZ60_RS14580 (OSZ60_14580)	-	3052021..3052470 (-)	450	WP_003161439.1	MOSC domain-containing protein	-
OSZ60_RS14585 (OSZ60_14585)	-	3052467..3053096 (-)	630	WP_033979733.1	DUF1780 domain-containing protein	-
OSZ60_RS14590 (OSZ60_14590)	-	3053229..3053654 (+)	426	WP_016562341.1	GNAT family N-acetyltransferase	-
OSZ60_RS14595 (OSZ60_14595)	-	3053651..3054121 (+)	471	WP_003103866.1	hypothetical protein	-
OSZ60_RS14600 (OSZ60_14600)	-	3054118..3054807 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
OSZ60_RS14605 (OSZ60_14605)	-	3054913..3055122 (+)	210	WP_003094660.1	hypothetical protein	-
OSZ60_RS14610 (OSZ60_14610)	yacG	3055159..3055359 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
OSZ60_RS14615 (OSZ60_14615)	coaE	3055356..3055967 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
OSZ60_RS14620 (OSZ60_14620)	pilD	3055964..3056836 (-)	873	WP_003107301.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
OSZ60_RS14625 (OSZ60_14625)	pilC	3056837..3058054 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
OSZ60_RS14630 (OSZ60_14630)	pilB	3058058..3059758 (-)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OSZ60_RS14635 (OSZ60_14635)	-	3059989..3060453 (+)	465	WP_003122079.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=760970 OSZ60_RS14620 WP_003107301.1 3055964..3056836(-) (pilD) [Pseudomonas aeruginosa strain BIAI 160]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=760970 OSZ60_RS14620 WP_003107301.1 3055964..3056836(-) (pilD) [Pseudomonas aeruginosa strain BIAI 160]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469