Detailed information NTG0076082

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDN16_RS07155
• Genome accession: NZ_AP024961
• Coordinates: 1601263..1602126 (+)
• Length: 287 a.a.
• NCBI ID: WP_027265237.1
• Uniprot ID: -
• Organism: Legionella pneumophila strain 80-045
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1596263..1607126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDN16_RS07135 (LEG80045_13840)	-	1596756..1597082 (-)	327	WP_011213802.1	DUF1820 family protein	-
LDN16_RS07140	-	1597265..1598008 (-)	744	WP_027265234.1	methyltransferase domain-containing protein	-
LDN16_RS07145 (LEG80045_13850)	pilB	1598267..1599991 (+)	1725	WP_027265235.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LDN16_RS07150 (LEG80045_13860)	pilC	1599997..1601217 (+)	1221	WP_027265236.1	type II secretion system F family protein	Machinery gene
LDN16_RS07155 (LEG80045_13870)	pilD	1601263..1602126 (+)	864	WP_027265237.1	A24 family peptidase	Machinery gene
LDN16_RS07160 (LEG80045_13880)	-	1602140..1603345 (-)	1206	WP_027265238.1	cyclic nucleotide-binding domain-containing protein	-
LDN16_RS07165 (LEG80045_13890)	-	1603453..1604046 (-)	594	WP_027265239.1	hypothetical protein	-
LDN16_RS07170 (LEG80045_13900)	-	1604062..1604517 (-)	456	WP_010947256.1	hypothetical protein	-
LDN16_RS07175 (LEG80045_13910)	-	1604651..1605466 (+)	816	WP_010947257.1	pyruvate, water dikinase regulatory protein	-
LDN16_RS07180 (LEG80045_13920)	-	1605586..1607034 (-)	1449	WP_027265240.1	bifunctional 2-methylcitrate dehydratase/aconitate hydratase	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 32803.37 Da
• Isoelectric Point: 7.8442

>NTDB_id=76082 LDN16_RS07155 WP_027265237.1 1601263..1602126(+) (pilD) [Legionella pneumophila strain 80-045]
MINALIINYPWFMYLVVGLFSLAVGSLLNVIIYRLPIILQEEWKEQCCELFHFEQRKEKIKLNLFLPRSFCPHCKAMVKA
WQNIPLLSYILLRGRCYQCDSPISIRYPFVETLTTVLSLYASWHFGFTIQLLFALLAIWILISLVFIDLDHQLLPDSLTL
GLLWIGLIANTQNVFVSLDVAVLSCAGAYLALWLFINLFYLMTGKVGMGHGDFKLFAAFGAWLGWMYLPLILLISSITGA
IIGLIYLKINGKSRDTAIPFGPFLCISGLIAMFWGDSIINWYIGYWM

Nucleotide

• Length: 864 bp

>NTDB_id=76082 LDN16_RS07155 WP_027265237.1 1601263..1602126(+) (pilD) [Legionella pneumophila strain 80-045]
ATGATAAATGCACTAATAATCAATTATCCATGGTTTATGTATTTAGTCGTTGGGCTCTTTTCTCTAGCCGTTGGAAGTTT
GCTTAATGTGATAATCTATCGCTTACCAATTATTTTGCAGGAAGAGTGGAAAGAGCAATGCTGTGAGCTATTCCATTTTG
AACAGCGAAAAGAAAAAATAAAACTTAATTTATTTTTACCACGTTCTTTTTGTCCTCATTGTAAAGCGATGGTTAAAGCG
TGGCAGAATATTCCTCTGTTAAGCTATATTTTGTTAAGAGGACGCTGTTACCAATGTGATAGTCCAATTTCAATCCGCTA
CCCTTTTGTTGAGACGTTGACTACAGTTTTATCCTTATACGCCAGTTGGCATTTTGGGTTTACAATACAATTATTATTTG
CTTTATTAGCTATCTGGATATTAATATCACTTGTTTTTATTGATCTTGATCATCAATTACTCCCTGATAGCCTCACTTTA
GGGCTCTTATGGATTGGCCTTATTGCTAATACCCAGAATGTATTTGTTAGTCTTGACGTTGCTGTATTAAGCTGCGCTGG
CGCCTATTTAGCCTTATGGTTATTCATTAATCTGTTTTATCTGATGACAGGTAAAGTAGGTATGGGACATGGAGATTTCA
AATTATTTGCAGCATTTGGTGCCTGGCTTGGATGGATGTATTTACCATTAATTCTACTAATATCTTCAATAACGGGGGCT
ATCATTGGTTTGATTTATTTAAAGATAAATGGTAAATCAAGAGATACTGCAATACCATTTGGCCCTTTTCTTTGCATTTC
TGGATTAATAGCTATGTTTTGGGGAGACTCAATTATCAATTGGTACATAGGTTATTGGATGTAA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.11	97.909	0.481
pilD	Acinetobacter nosocomialis M2	47.985	95.122	0.456
pilD	Acinetobacter baumannii D1279779	47.273	95.819	0.453
pilD	Vibrio campbellii strain DS40M4	45.29	96.167	0.436
pilD	Neisseria gonorrhoeae MS11	42.446	96.864	0.411