Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OVY33_RS02890 Genome accession   NZ_CP113107
Coordinates   573273..573902 (-) Length   209 a.a.
NCBI ID   WP_103357165.1    Uniprot ID   A0A2K3YWU0
Organism   Staphylococcus rostri strain PJFA-333     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 568273..578902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OVY33_RS02860 - 568712..569950 (-) 1239 WP_103357160.1 aminopeptidase -
  OVY33_RS02865 - 569964..570170 (-) 207 WP_103357178.1 DUF1128 family protein -
  OVY33_RS02870 - 570303..570761 (+) 459 WP_103357161.1 low molecular weight protein-tyrosine-phosphatase -
  OVY33_RS02875 - 570765..571046 (+) 282 WP_309306684.1 YtxH domain-containing protein -
  OVY33_RS02880 - 571282..572607 (+) 1326 WP_103357163.1 YihY/virulence factor BrkB family protein -
  OVY33_RS02885 - 572640..573215 (+) 576 WP_103357164.1 carbonic anhydrase -
  OVY33_RS02890 vraR 573273..573902 (-) 630 WP_103357165.1 response regulator transcription factor Regulator
  OVY33_RS02895 vraS 573892..574935 (-) 1044 WP_103357166.1 sensor histidine kinase Regulator
  OVY33_RS02900 liaF 574932..575633 (-) 702 WP_103357167.1 cell wall-active antibiotics response protein LiaF -
  OVY33_RS02905 - 575646..576035 (-) 390 WP_103357168.1 hypothetical protein -
  OVY33_RS02910 map 576133..576894 (-) 762 WP_103357169.1 type I methionyl aminopeptidase -
  OVY33_RS02915 - 576991..577989 (+) 999 WP_103357170.1 aromatic acid exporter family protein -
  OVY33_RS02920 - 578114..578839 (-) 726 WP_103357171.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23407.89 Da        Isoelectric Point: 4.7888

>NTDB_id=760282 OVY33_RS02890 WP_103357165.1 573273..573902(-) (vraR) [Staphylococcus rostri strain PJFA-333]
MTVKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGGSGREAIEKAHELHPDVILMDLVMTDMDGVEATTQIKKDLPSIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTSQGESVFEAEVLVKMRNRMKQRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=760282 OVY33_RS02890 WP_103357165.1 573273..573902(-) (vraR) [Staphylococcus rostri strain PJFA-333]
ATGACAGTTAAAGTATTATTTGTGGATGATCATGAGATGGTCCGTATTGGGATTTCGAGTTATTTATCGACACAAAGTGA
TATTGAAGTAGTAGGTGAAGGGGGCTCTGGACGAGAAGCGATTGAAAAGGCGCATGAACTACATCCAGATGTCATCTTAA
TGGACCTCGTCATGACAGATATGGACGGCGTAGAAGCAACGACACAAATTAAGAAAGACTTGCCATCAATTAAAGTCGTT
ATGCTGACGAGTTACATAGAGGATAAAGAAGTGTATCGTGCATTAGATGCAGGTGTAGACAGCTATATTCTGAAGACGAC
GAGTGCAAGTGATATTGCAGAAGCGATACGTAAAACGAGCCAAGGTGAGTCAGTGTTTGAAGCGGAAGTATTGGTTAAAA
TGCGTAATCGTATGAAACAACGTGCGGAACTGTATGAAATGTTAACAGAACGTGAAATGGAAATCTTATTGCTGATTGCG
AAAGGGTATTCTAACCAAGAGATTGCCAGTGCGTCACACATTACGATTAAAACAGTAAAAACGCATGTGAGTAACATTCT
GAGTAAATTGGAAGTACAAGACCGTACACAAGCGGTTATATATGCATTTCAACACGGTTTAATTGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K3YWU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.909

100

0.909
  degU Bacillus subtilis subsp. subtilis str. 168

36.607

100

0.392