Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   P7I93_RS29850 Genome accession   NZ_CP124658
Coordinates   6280999..6281523 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2022CK-00068     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6275999..6286523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I93_RS29835 (P7I93_29835) aroB 6277115..6278221 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  P7I93_RS29840 (P7I93_29840) aroK 6278271..6278789 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P7I93_RS29845 (P7I93_29845) pilQ 6278801..6280945 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  P7I93_RS29850 (P7I93_29850) comL/pilP 6280999..6281523 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P7I93_RS29855 (P7I93_29855) pilO 6281520..6282143 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P7I93_RS29860 (P7I93_29860) pilN 6282140..6282736 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P7I93_RS29865 (P7I93_29865) pilM 6282736..6283788 (-) 1053 WP_034055307.1 type IV pilus assembly protein PilM Machinery gene
  P7I93_RS29870 (P7I93_29870) - 6283893..6285197 (+) 1305 WP_010793081.1 IS1380-like element ISPa33 family transposase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=760201 P7I93_RS29850 WP_003095836.1 6280999..6281523(-) (comL/pilP) [Pseudomonas aeruginosa strain 2022CK-00068]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=760201 P7I93_RS29850 WP_003095836.1 6280999..6281523(-) (comL/pilP) [Pseudomonas aeruginosa strain 2022CK-00068]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362