Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OSW16_RS07750 Genome accession   NZ_CP113097
Coordinates   1702367..1704598 (+) Length   743 a.a.
NCBI ID   WP_267822051.1    Uniprot ID   -
Organism   Pseudomonas putida strain WYTS.T61     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1697367..1709598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSW16_RS07730 (OSW16_07730) - 1699250..1699873 (+) 624 WP_267822043.1 glutathione S-transferase -
  OSW16_RS07735 (OSW16_07735) - 1700006..1700938 (+) 933 WP_267822045.1 ABC transporter ATP-binding protein -
  OSW16_RS07740 (OSW16_07740) - 1700935..1701714 (+) 780 WP_267822047.1 ABC transporter permease -
  OSW16_RS07745 (OSW16_07745) - 1701598..1702224 (-) 627 WP_267822049.1 DUF2062 domain-containing protein -
  OSW16_RS07750 (OSW16_07750) comA 1702367..1704598 (+) 2232 WP_267822051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OSW16_RS07755 (OSW16_07755) exbB 1704667..1705302 (+) 636 WP_241803021.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OSW16_RS07760 (OSW16_07760) - 1705299..1705733 (+) 435 WP_267822053.1 ExbD/TolR family protein -
  OSW16_RS07765 (OSW16_07765) lpxK 1705733..1706743 (+) 1011 WP_267822055.1 tetraacyldisaccharide 4'-kinase -
  OSW16_RS07770 (OSW16_07770) - 1706787..1706972 (+) 186 WP_003247142.1 Trm112 family protein -
  OSW16_RS07775 (OSW16_07775) kdsB 1706969..1707733 (+) 765 WP_241803024.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSW16_RS07780 (OSW16_07780) - 1707733..1708197 (+) 465 WP_267822057.1 low molecular weight protein-tyrosine-phosphatase -
  OSW16_RS07785 (OSW16_07785) murB 1708194..1709213 (+) 1020 WP_267822058.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80237.06 Da        Isoelectric Point: 10.1992

>NTDB_id=760172 OSW16_RS07750 WP_267822051.1 1702367..1704598(+) (comA) [Pseudomonas putida strain WYTS.T61]
MRTGMFALALGLLCLGIVPQLPSVGWLWLLLGGGLLCLCTRLWPLGCFALGLCWACWSAQQALDDRLASGLDGRTLWLEG
RVVGLPTHTARGVRFELEQPRSRRAALPQRLQLHWFDGPPLRAGERWRLAATLQRPAGLLNPHGPDREAQLLARRIGATG
TVKAGHVLDAAQPGWRDALRQRLLSVAAHGREAALVALVLGDGAGLAREDWQALQATGTVHLLVISGQHIGLVAGLLYAL
VAGLARRGLWPAALPWLPCACGLALGAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGALFPLLLALTGVLLAEPL
APLLPGFWLSFAAVATLVYCFSSRLGRWRPWQGWTRAQWVIAIGLLPVLIATGLPVSLSAPLANLLAVPWISLAVLPLAL
LGTLLLPLAGVGEGLLWLAGGLLDVLFRSLAWVADWRPAWLPPALPTWAWLMVCLGALLVLLPSGVPLRSLGGTLLLALW
VPREAVPPGQVEVWQLDVGQGLAVLLRTQHHSLLYDAGPARGDSDLGERVVLPTLHKLGVKRLDIMLVSHAHADHAGGAP
AVNRGLPVVRALGGEALEDLALQPCTRGEQWEWDGVRFSLWHWAQGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
ADHAAPRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNGFGHPHVQVLERYRRHGLAIHDTAVEGALRLMLGSRG
EVEGVRGQRRFWRSRGAYPHAIP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=760172 OSW16_RS07750 WP_267822051.1 1702367..1704598(+) (comA) [Pseudomonas putida strain WYTS.T61]
ATGCGCACAGGGATGTTTGCGCTGGCGCTCGGGCTGTTGTGCCTGGGTATTGTTCCCCAATTGCCATCGGTCGGGTGGCT
GTGGCTGCTGCTCGGTGGCGGCCTGCTTTGCCTGTGCACACGCCTTTGGCCGCTGGGTTGCTTTGCGCTGGGGCTGTGCT
GGGCTTGCTGGTCGGCGCAGCAGGCACTGGATGACCGCCTGGCCTCTGGCCTGGATGGCCGTACGCTGTGGCTGGAGGGC
CGGGTGGTCGGCTTGCCGACCCACACGGCGCGTGGGGTGCGCTTTGAGCTGGAGCAACCGCGCTCGCGCCGCGCTGCGTT
GCCCCAGCGCCTGCAATTGCATTGGTTCGATGGCCCACCGCTGCGTGCTGGCGAGCGCTGGCGCCTGGCCGCTACCCTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCACGGTCCGGACCGGGAGGCACAGTTGTTGGCCAGGCGCATCGGTGCCACTGGC
ACGGTCAAGGCCGGCCATGTGCTGGATGCCGCGCAGCCGGGCTGGCGTGACGCTCTGCGCCAGCGCTTGTTGAGTGTCGC
TGCCCATGGCCGGGAAGCTGCCCTCGTCGCGCTGGTGCTCGGTGATGGCGCCGGCTTGGCCCGCGAGGACTGGCAAGCGC
TGCAGGCCACGGGCACAGTCCACCTGTTGGTGATTTCGGGGCAGCACATCGGCCTGGTCGCCGGCTTGCTCTACGCCCTG
GTCGCCGGCCTGGCGCGCCGGGGCCTGTGGCCTGCGGCTCTACCCTGGTTGCCGTGTGCATGTGGCCTGGCCCTGGGCGC
GGCGCTGGCCTATGGCTGGCTGGCCGGTGCGGGGGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCCGTGGTCTTGCTCT
GGCGCCTGCGCTTTCGCCATCTTGGGGCGCTGTTCCCTTTGCTGCTGGCGCTCACCGGGGTGCTGCTGGCCGAGCCCCTG
GCCCCGCTGTTGCCTGGTTTCTGGCTGTCGTTCGCGGCAGTGGCGACCCTGGTCTACTGCTTCAGTTCGCGTCTTGGCAG
GTGGCGGCCCTGGCAAGGGTGGACCCGCGCCCAGTGGGTGATCGCCATCGGCCTGCTGCCGGTATTGATCGCCACCGGTT
TGCCGGTCAGCCTGAGTGCGCCATTGGCCAACTTGCTGGCAGTACCCTGGATCAGCCTGGCGGTATTGCCTTTGGCGCTG
CTTGGGACCTTGCTGCTGCCGTTGGCAGGGGTAGGTGAAGGCCTGTTGTGGCTGGCAGGTGGGCTCTTGGACGTCTTGTT
CCGGTCGCTGGCGTGGGTAGCGGACTGGCGCCCGGCATGGCTACCGCCTGCGTTGCCGACCTGGGCCTGGCTGATGGTCT
GCCTGGGGGCGTTGCTGGTGCTGCTGCCGTCCGGCGTGCCCCTGCGCAGCCTGGGCGGGACCCTGCTGCTGGCGTTGTGG
GTGCCCAGGGAAGCTGTGCCCCCTGGGCAGGTGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCTTGGCGGTCTTGCTGCG
CACCCAACATCACAGCCTGCTCTACGACGCCGGGCCTGCGCGGGGCGATAGTGATCTGGGTGAGCGGGTGGTGTTGCCCA
CTTTGCACAAGCTGGGCGTCAAGCGCCTGGACATCATGCTCGTCAGCCATGCCCATGCCGACCATGCCGGTGGCGCACCG
GCCGTGAACCGTGGGTTGCCGGTGGTGCGTGCGCTGGGCGGCGAAGCGCTGGAGGACCTTGCCCTGCAGCCGTGTACGCG
TGGTGAGCAGTGGGAATGGGATGGGGTGCGCTTTTCGCTGTGGCATTGGGCCCAAGGGCAGAGCAGCAACGACCGCTCGT
GCGTGCTGCTGGTCGAGGCGCAGGGAGAGCGGCTGCTATTGGCAGGCGATATGGAGGCGGGGGCCGAGCGCGCATGGTTG
GCGGACCACGCCGCGCCACGTATCGATTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCCTCGACCGAGGCATTCAT
CCGCGCCACGGCGCCGCGCGGGGTGCTGATTTCGCGCGGGCGTAACAACGGTTTCGGGCATCCGCATGTGCAGGTGCTCG
AGCGGTATCGGCGGCATGGGCTGGCCATTCACGATACGGCGGTGGAGGGGGCGTTGCGGTTGATGTTGGGAAGCCGTGGC
GAAGTGGAGGGCGTACGGGGGCAACGACGCTTTTGGCGCAGTAGGGGGGCATACCCCCACGCAATTCCCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Competence protein (Competence)

(198-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.75

96.904

0.569
  comA Ralstonia pseudosolanacearum GMI1000

34.827

100

0.366