Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OSW16_RS07755 Genome accession   NZ_CP113097
Coordinates   1704667..1705302 (+) Length   211 a.a.
NCBI ID   WP_241803021.1    Uniprot ID   -
Organism   Pseudomonas putida strain WYTS.T61     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1699667..1710302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSW16_RS07735 (OSW16_07735) - 1700006..1700938 (+) 933 WP_267822045.1 ABC transporter ATP-binding protein -
  OSW16_RS07740 (OSW16_07740) - 1700935..1701714 (+) 780 WP_267822047.1 ABC transporter permease -
  OSW16_RS07745 (OSW16_07745) - 1701598..1702224 (-) 627 WP_267822049.1 DUF2062 domain-containing protein -
  OSW16_RS07750 (OSW16_07750) comA 1702367..1704598 (+) 2232 WP_267822051.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OSW16_RS07755 (OSW16_07755) exbB 1704667..1705302 (+) 636 WP_241803021.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OSW16_RS07760 (OSW16_07760) - 1705299..1705733 (+) 435 WP_267822053.1 ExbD/TolR family protein -
  OSW16_RS07765 (OSW16_07765) lpxK 1705733..1706743 (+) 1011 WP_267822055.1 tetraacyldisaccharide 4'-kinase -
  OSW16_RS07770 (OSW16_07770) - 1706787..1706972 (+) 186 WP_003247142.1 Trm112 family protein -
  OSW16_RS07775 (OSW16_07775) kdsB 1706969..1707733 (+) 765 WP_241803024.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSW16_RS07780 (OSW16_07780) - 1707733..1708197 (+) 465 WP_267822057.1 low molecular weight protein-tyrosine-phosphatase -
  OSW16_RS07785 (OSW16_07785) murB 1708194..1709213 (+) 1020 WP_267822058.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22905.20 Da        Isoelectric Point: 7.3616

>NTDB_id=760173 OSW16_RS07755 WP_241803021.1 1704667..1705302(+) (exbB) [Pseudomonas putida strain WYTS.T61]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEESASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGTQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=760173 OSW16_RS07755 WP_241803021.1 1704667..1705302(+) (exbB) [Pseudomonas putida strain WYTS.T61]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTTACCCCGCCACACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGTGAGATCCTCGCTGCGGGCCTGGCCAAC
TCGCGCCATGGCCGTGAAATCATGAAAGAGTGCATCGAGGAGTCGGCCTCGCGGGTCATCCACGAACTGGAGCGCTACAT
CAGCACGCTCGGTACCATCGCCGCGATGGCCCCGCTGCTTGGCCTGCTCGGTACCGTACTGGGCATGATCGATATCTTCA
GCGCCTTCATGGGGACGCAGATGACCGCCAATGCGGCCGTGCTGGCCAGTGGTATTTCCAAGGCGCTGGTCACTACGGCG
GCTGGCCTGATGGTCGGCATCCCGGCCGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGACGAACTGGTGGTGGGCAT
GGAGCAGGAGGCAATCAAGCTGGTGGAGGTCATCCAGGGCGACCGTGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815