Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OSS47_RS17635 Genome accession   NZ_CP113096
Coordinates   3866333..3868540 (+) Length   735 a.a.
NCBI ID   WP_177331067.1    Uniprot ID   -
Organism   Pseudomonas citronellolis strain G5Li.T10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3861333..3873540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSS47_RS17615 (OSS47_17615) - 3861721..3862974 (+) 1254 WP_009621388.1 lipoprotein-releasing ABC transporter permease subunit -
  OSS47_RS17620 (OSS47_17620) lolD 3862967..3863650 (+) 684 WP_009621390.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OSS47_RS17625 (OSS47_17625) - 3863667..3864917 (+) 1251 WP_009621392.1 lipoprotein-releasing ABC transporter permease subunit -
  OSS47_RS17630 (OSS47_17630) - 3865666..3866196 (-) 531 WP_043316177.1 DUF2062 domain-containing protein -
  OSS47_RS17635 (OSS47_17635) comA 3866333..3868540 (+) 2208 WP_177331067.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OSS47_RS17640 (OSS47_17640) exbB 3868613..3869248 (+) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OSS47_RS17645 (OSS47_17645) - 3869245..3869691 (+) 447 WP_009621400.1 ExbD/TolR family protein -
  OSS47_RS17650 (OSS47_17650) lpxK 3869691..3870689 (+) 999 WP_043316174.1 tetraacyldisaccharide 4'-kinase -
  OSS47_RS17655 (OSS47_17655) - 3870730..3870915 (+) 186 WP_009621404.1 Trm112 family protein -
  OSS47_RS17660 (OSS47_17660) kdsB 3870929..3871693 (+) 765 WP_043316171.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSS47_RS17665 (OSS47_17665) - 3871693..3872154 (+) 462 WP_043316169.1 low molecular weight protein-tyrosine-phosphatase -
  OSS47_RS17670 (OSS47_17670) murB 3872151..3873170 (+) 1020 WP_043316167.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 78432.61 Da        Isoelectric Point: 8.2204

>NTDB_id=760156 OSS47_RS17635 WP_177331067.1 3866333..3868540(+) (comA) [Pseudomonas citronellolis strain G5Li.T10]
MMALACGLLLLRFLPQLPPLAALLPLVGMALLCLYRRHHAVALFLLGFAWACLFAHDSWEGRLAPELDGRTLWLEGQVAG
LPASADGIVRFELEDVQARLDLPGRIRVSWYGGPEVRAGERWRLAVTLRRPHGLANDFGFDYEAWLAADGIGATGSVKDG
RRLAEATGPMAWREAWKDRLLAVDARGRNAYLVALVLGDGSGLGRDDWDMLQDTGTLHLMVISGSHISLLGGLLYALVAG
LARLGAWPARVPWLPCACAAALAGAWGYGWIAGLQVPALRACLMLSMVLLWRLHFRRQGVWLPLLGALLVVLLVDPLVSL
TPGFWLSFAAVALLVYGFAGRLGRGAGWLAWGRAQWLMALGLAPVLLALGLPLSPAGALANLIAVPCVELLVVPLALVGS
LLLWLPAVGEGLLWLAGGVLDVLLGLLGRLSLYSPAWHPMAPPAWSIALALFGALLCLAPAGLPLRPLGLALLLPMFWPH
STTPPHGHAEVRVLDVGQGLSVLIRTRQHTWLYDAGPRRGDFDLGEVAVLPTLRGLGVERLDVLLLSHADNDHAGGARSV
AAAVPVARIISGEPGRLPDSLPAGPCGNEAWQLDGVRFSTWQWPGATDSNGRSCVLHVEAGGESLLLTGDLPAAGEAAWL
ASHPGLGADWLLAGHHGSRSASSAAFVRQLAPRAALVSRSRHNAHGHPSSEVLQRFAEQGTKVHDVAREGALRLLLGQRG
TLRGVRENAGFWREK

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=760156 OSS47_RS17635 WP_177331067.1 3866333..3868540(+) (comA) [Pseudomonas citronellolis strain G5Li.T10]
ATGATGGCGCTGGCCTGCGGCCTGTTGCTGCTGCGTTTCCTGCCCCAGCTGCCACCCTTGGCGGCCCTGCTGCCATTGGT
CGGAATGGCGCTGCTGTGCCTGTATCGGCGACATCACGCGGTGGCGCTCTTCCTGCTCGGCTTCGCCTGGGCCTGCCTGT
TCGCCCATGACTCGTGGGAGGGGCGCCTGGCTCCCGAGCTGGACGGGCGGACGCTGTGGCTGGAAGGGCAGGTTGCCGGC
CTGCCGGCTAGCGCGGATGGCATCGTCCGCTTCGAGCTGGAGGACGTCCAGGCGCGCCTGGACCTGCCCGGGCGCATCCG
CGTGTCCTGGTATGGCGGCCCGGAGGTGCGGGCCGGGGAGCGCTGGCGCCTGGCGGTCACCCTGCGCCGCCCCCATGGCC
TGGCCAACGACTTCGGTTTCGACTATGAAGCCTGGCTGGCGGCCGACGGCATAGGCGCCACCGGCAGCGTCAAGGATGGC
CGGCGCCTGGCCGAGGCCACGGGACCGATGGCTTGGCGCGAAGCCTGGAAGGACCGGCTGCTGGCGGTGGATGCCCGGGG
ACGCAACGCCTACCTGGTGGCCCTGGTCCTCGGCGACGGCAGCGGCCTGGGCCGGGACGACTGGGACATGCTGCAGGACA
CCGGCACCCTGCACCTGATGGTGATCTCCGGCTCGCACATCTCCCTGCTGGGCGGCTTGCTCTACGCCCTGGTGGCGGGT
CTGGCGCGCCTGGGAGCCTGGCCGGCGCGCGTGCCCTGGCTGCCCTGCGCCTGTGCCGCCGCACTGGCTGGCGCCTGGGG
CTATGGCTGGATCGCCGGGCTGCAGGTGCCGGCATTGCGCGCTTGCCTGATGCTCAGCATGGTGCTGCTGTGGCGCCTGC
ACTTTCGTCGCCAGGGCGTCTGGCTGCCGCTGCTCGGCGCTCTGCTGGTGGTGCTGCTGGTCGATCCATTGGTCAGCCTG
ACGCCCGGCTTCTGGCTGTCCTTCGCCGCCGTGGCGCTGCTCGTCTACGGCTTCGCCGGGCGCCTGGGGCGGGGGGCCGG
CTGGCTGGCCTGGGGGCGCGCGCAGTGGCTCATGGCCCTCGGGCTGGCACCGGTGTTGCTGGCCCTGGGCCTGCCGCTGA
GTCCCGCCGGCGCGCTGGCGAACCTGATCGCGGTGCCCTGTGTCGAGTTGCTGGTGGTGCCCCTGGCGCTGGTCGGCAGC
CTGCTGCTGTGGCTGCCGGCGGTGGGCGAGGGGCTGCTATGGCTGGCCGGTGGCGTGCTCGACGTGCTGCTGGGCCTGCT
CGGGCGCCTGTCGCTGTATTCCCCGGCCTGGCATCCCATGGCACCGCCGGCCTGGAGCATCGCCCTGGCCCTGTTCGGCG
CGCTGCTGTGCCTGGCGCCGGCCGGGCTGCCGCTGCGCCCGCTGGGCCTGGCGTTGCTGTTGCCGATGTTCTGGCCGCAT
TCCACTACGCCGCCCCATGGCCATGCCGAAGTGCGGGTGCTGGACGTGGGCCAGGGGCTGTCCGTGCTGATCCGCACCCG
CCAGCACACCTGGCTGTACGACGCCGGACCGCGCCGGGGCGATTTCGACCTCGGCGAGGTGGCGGTGCTGCCGACTCTTC
GTGGCCTGGGCGTCGAACGCCTGGACGTGCTGCTGCTCAGCCATGCCGACAACGACCACGCCGGCGGCGCCCGCTCGGTG
GCGGCGGCCGTGCCGGTAGCGCGGATCATCAGCGGCGAGCCCGGGCGTTTGCCGGACAGCCTGCCTGCCGGCCCCTGCGG
CAACGAGGCATGGCAGCTGGACGGCGTGCGCTTCTCCACCTGGCAGTGGCCCGGCGCGACGGACAGCAACGGTCGCTCCT
GCGTGCTGCACGTCGAGGCTGGCGGCGAGAGCCTGCTGCTCACCGGCGACCTGCCGGCCGCAGGCGAGGCCGCCTGGCTG
GCCAGCCATCCTGGGCTTGGCGCCGACTGGCTGCTGGCCGGCCACCATGGCAGCCGCAGCGCCTCTTCCGCGGCCTTCGT
CAGGCAACTGGCGCCCCGCGCGGCGCTGGTTTCCCGCTCGCGGCACAACGCCCATGGCCATCCGTCCAGCGAGGTGCTGC
AACGCTTTGCCGAGCAGGGGACGAAGGTGCACGATGTGGCCCGGGAGGGCGCCCTGCGCCTGCTCCTGGGCCAGCGCGGA
ACGCTGCGCGGCGTGCGCGAAAATGCCGGATTCTGGAGGGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(195-458)

Metallo-beta-lactamase superfamily (Lactamase_B)

(495-677)

Domain of unknown function (DUF4131) (DUF4131)

(16-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

57.222

97.959

0.561
  comA Ralstonia pseudosolanacearum GMI1000

35.573

100

0.367