Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OSS47_RS17640 Genome accession   NZ_CP113096
Coordinates   3868613..3869248 (+) Length   211 a.a.
NCBI ID   WP_009621398.1    Uniprot ID   A0A1A5CYN3
Organism   Pseudomonas citronellolis strain G5Li.T10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3863613..3874248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSS47_RS17625 (OSS47_17625) - 3863667..3864917 (+) 1251 WP_009621392.1 lipoprotein-releasing ABC transporter permease subunit -
  OSS47_RS17630 (OSS47_17630) - 3865666..3866196 (-) 531 WP_043316177.1 DUF2062 domain-containing protein -
  OSS47_RS17635 (OSS47_17635) comA 3866333..3868540 (+) 2208 WP_177331067.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OSS47_RS17640 (OSS47_17640) exbB 3868613..3869248 (+) 636 WP_009621398.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OSS47_RS17645 (OSS47_17645) - 3869245..3869691 (+) 447 WP_009621400.1 ExbD/TolR family protein -
  OSS47_RS17650 (OSS47_17650) lpxK 3869691..3870689 (+) 999 WP_043316174.1 tetraacyldisaccharide 4'-kinase -
  OSS47_RS17655 (OSS47_17655) - 3870730..3870915 (+) 186 WP_009621404.1 Trm112 family protein -
  OSS47_RS17660 (OSS47_17660) kdsB 3870929..3871693 (+) 765 WP_043316171.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSS47_RS17665 (OSS47_17665) - 3871693..3872154 (+) 462 WP_043316169.1 low molecular weight protein-tyrosine-phosphatase -
  OSS47_RS17670 (OSS47_17670) murB 3872151..3873170 (+) 1020 WP_043316167.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22919.12 Da        Isoelectric Point: 8.0527

>NTDB_id=760157 OSS47_RS17640 WP_009621398.1 3868613..3869248(+) (exbB) [Pseudomonas citronellolis strain G5Li.T10]
MWELVKAGGWMMLPIILSSIAATAIVAERLWTLRRSRIAPPQLLGQVWKQIKDKKLNSQALKELKASSPLGEVLAAGLVN
SKHGREIMKECIEEAAGRVIHEMERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPQLAGGISKALVTTAS
GLIVAIPAVFFHRYLLRRVDELVVAMEQEAIKLVEMVQGDREVDLSEDGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=760157 OSS47_RS17640 WP_009621398.1 3868613..3869248(+) (exbB) [Pseudomonas citronellolis strain G5Li.T10]
GTGTGGGAACTGGTCAAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCACCGCCATCGTCGC
CGAACGACTCTGGACCCTGCGCCGCAGCCGCATCGCCCCGCCGCAGCTGCTGGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGCTGAACAGCCAGGCGCTCAAGGAGCTCAAGGCGTCTTCCCCGCTGGGCGAGGTGCTCGCCGCCGGCCTGGTCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGGCCGGGTGATCCACGAGATGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCCCCGCAGCTCGCCGGCGGCATCTCCAAGGCCCTGGTGACCACCGCCTCC
GGCCTGATCGTGGCCATCCCGGCCGTGTTCTTCCATCGCTACCTGCTGCGCCGCGTCGATGAGCTGGTGGTGGCCATGGA
GCAGGAAGCGATCAAGCTGGTGGAAATGGTCCAGGGCGACCGCGAGGTCGACCTCTCCGAGGATGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806