Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OSS47_RS13295 Genome accession   NZ_CP113096
Coordinates   2906318..2907655 (-) Length   445 a.a.
NCBI ID   WP_009617580.1    Uniprot ID   A0A1A5D7F7
Organism   Pseudomonas citronellolis strain G5Li.T10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901318..2912655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSS47_RS13260 (OSS47_13260) - 2901972..2902505 (-) 534 WP_043318034.1 PilX N-terminal domain-containing pilus assembly protein -
  OSS47_RS13265 (OSS47_13265) - 2902502..2903281 (-) 780 WP_043318036.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OSS47_RS13270 (OSS47_13270) pilV 2903293..2903847 (-) 555 WP_043273646.1 type IV pilus modification protein PilV -
  OSS47_RS30625 - 2903844..2904323 (-) 480 WP_043273648.1 GspH/FimT family pseudopilin -
  OSS47_RS13285 (OSS47_13285) - 2904473..2904985 (-) 513 WP_009617575.1 GspH/FimT family protein -
  OSS47_RS13290 (OSS47_13290) thiO 2905164..2906273 (+) 1110 WP_043318038.1 glycine oxidase ThiO -
  OSS47_RS13295 (OSS47_13295) pilR 2906318..2907655 (-) 1338 WP_009617580.1 sigma-54-dependent transcriptional regulator Regulator
  OSS47_RS13300 (OSS47_13300) pilS 2907667..2909256 (-) 1590 WP_043273654.1 sensor histidine kinase Regulator
  OSS47_RS13305 (OSS47_13305) - 2909249..2909479 (-) 231 WP_043318040.1 PP0621 family protein -
  OSS47_RS13310 (OSS47_13310) - 2909618..2910631 (-) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  OSS47_RS13315 (OSS47_13315) rluD 2910778..2911737 (+) 960 WP_043318043.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OSS47_RS13320 (OSS47_13320) pgeF 2911734..2912462 (+) 729 WP_043318047.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49524.78 Da        Isoelectric Point: 5.6352

>NTDB_id=760149 OSS47_RS13295 WP_009617580.1 2906318..2907655(-) (pilR) [Pseudomonas citronellolis strain G5Li.T10]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAKEYLAREPFDLCLTDMRLPDGTGMDLVQHIQQRHPQVPVAM
ITAFGSLDTAVNALKAGAFDFLTKPVDLGRLRELVATALRLRSPGAEDAPVDNRLLGDSPPMRQMRNQIAKLARSQAPVY
ISGESGSGKELVARLIHEQGPRSEVAFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVAVDVRVLCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIPLLTERV
LKRLASDSGLAAAQVSPEALEKLKSYRFPGNVRELENMLERAYTLCEDDVIQPNDLRFAEATGGGESGEASLAQIDNLED
YLEEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=760149 OSS47_RS13295 WP_009617580.1 2906318..2907655(-) (pilR) [Pseudomonas citronellolis strain G5Li.T10]
ATGAGCCGGCAAAAAGCCCTGATCGTCGACGACGAACCGGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAGGCCAAGGAATACCTGGCCCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCCGACGGCACCGGCATGGACCTGGTGCAGCACATCCAGCAGCGCCACCCGCAGGTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGACACCGCGGTCAACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTGGCCACGGCCCTGCGCCTGCGCTCGCCGGGCGCGGAGGACGCGCCGGTGGACAACC
GCCTGCTGGGCGATTCGCCGCCCATGCGGCAGATGCGCAACCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATCCACGAACAGGGCCCGCGCAGCGAAGTGGCCTT
CGTCCCGGTGAACTGCGGCGCCATCCCGTCCGAGCTGATGGAAAGCGAATTCTTCGGGCACAAGAAAGGCAGCTTCACCG
GCGCCGTGGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAACGGCGGCACCCTGTTCCTCGACGAAGTGGCCGACCTGCCC
TTGCCGATGCAGGTGAAACTGCTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCAGTGGGCGGCCAGCAGGAAGTGGCGGT
GGACGTGCGCGTGCTCTGCGCCACCCACAAGGACCTGGCCGCGGAAGTCGCCGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTCACCGAGCGCGTG
CTCAAGCGCCTGGCCAGCGACAGCGGCCTGGCCGCGGCACAGGTCAGCCCCGAAGCCCTGGAAAAGCTCAAGAGCTACCG
TTTCCCGGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTGTGCGAAGACGACGTCATCCAGCCCA
ACGACCTTCGTTTCGCCGAGGCCACCGGCGGCGGCGAAAGCGGCGAGGCCAGCCTGGCGCAAATCGACAATCTCGAGGAT
TACCTCGAAGAGATCGAGCGCAAGCTGATCATGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCCGCAGCCCAGCG
ATTGGGTCTGACGTTCCGTTCGATGCGCTATCGCTTGAAGAAGCTGGGTATCGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D7F7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.764

100

0.888
  pilR Acinetobacter baumannii strain A118

49.891

100

0.515