Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OSS47_RS13300 Genome accession   NZ_CP113096
Coordinates   2907667..2909256 (-) Length   529 a.a.
NCBI ID   WP_043273654.1    Uniprot ID   A0A1A5D6Q3
Organism   Pseudomonas citronellolis strain G5Li.T10     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2902667..2914256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSS47_RS13270 (OSS47_13270) pilV 2903293..2903847 (-) 555 WP_043273646.1 type IV pilus modification protein PilV -
  OSS47_RS30625 - 2903844..2904323 (-) 480 WP_043273648.1 GspH/FimT family pseudopilin -
  OSS47_RS13285 (OSS47_13285) - 2904473..2904985 (-) 513 WP_009617575.1 GspH/FimT family protein -
  OSS47_RS13290 (OSS47_13290) thiO 2905164..2906273 (+) 1110 WP_043318038.1 glycine oxidase ThiO -
  OSS47_RS13295 (OSS47_13295) pilR 2906318..2907655 (-) 1338 WP_009617580.1 sigma-54-dependent transcriptional regulator Regulator
  OSS47_RS13300 (OSS47_13300) pilS 2907667..2909256 (-) 1590 WP_043273654.1 sensor histidine kinase Regulator
  OSS47_RS13305 (OSS47_13305) - 2909249..2909479 (-) 231 WP_043318040.1 PP0621 family protein -
  OSS47_RS13310 (OSS47_13310) - 2909618..2910631 (-) 1014 WP_009617585.1 outer membrane protein assembly factor BamD -
  OSS47_RS13315 (OSS47_13315) rluD 2910778..2911737 (+) 960 WP_043318043.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OSS47_RS13320 (OSS47_13320) pgeF 2911734..2912462 (+) 729 WP_043318047.1 peptidoglycan editing factor PgeF -
  OSS47_RS13325 (OSS47_13325) - 2912560..2912724 (+) 165 WP_161796264.1 hypothetical protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58463.49 Da        Isoelectric Point: 7.2738

>NTDB_id=760150 OSS47_RS13300 WP_043273654.1 2907667..2909256(-) (pilS) [Pseudomonas citronellolis strain G5Li.T10]
MAKAIPISGQQGQRILRLYHLYRLSIGLLLVLLISSDLDDRVLNVGQSALFHASCWSYLIVNILIAVLMPTPRQLLPIFL
LALFDILALCGLFYAAGGVPSGIGNLLVVAVGIANILLRGRIGLLIAAVAAIGMIYLTFYLSLSQPTAINHYVQAGSLGA
LSFAAALLLQGLARRQQLTEHLAEERATTVANLEELNALILQRMRTGILVLDSRHRVLLANQSALGLLAQPELAGKLATE
HCPELLDSLQQWERNPSLRPPSLQAPEGGPMLQPSFIPLRRGEEQHTLVFLEDISQIAQQAQQLKLAALGRLTAGIAHEI
RNPLGAISHAAQLLQESETLDAPDRRLTQIIQDQSRRMNLVIENVLQLSRRRQAEPQQLDLRQWLQRFTDEQREGLRGDQ
QIHLQMGGGEIQTRMDPSQLTQVLGNLVQNGLRYSARQNGSGQVWLNLFRDRDSDLPVLEVLDDGPGIAPEQLGKLFEPF
FTTESKGTGLGLYISRELCESNQARIDFKNRDEGGGSFRITFAHPRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=760150 OSS47_RS13300 WP_043273654.1 2907667..2909256(-) (pilS) [Pseudomonas citronellolis strain G5Li.T10]
ATGGCTAAGGCCATCCCCATCAGCGGCCAGCAGGGGCAGCGCATCCTCCGCCTGTACCACCTGTACCGCCTGAGCATCGG
CCTGCTGCTGGTGCTGCTGATTTCCAGCGACCTCGACGACCGCGTGCTCAACGTCGGCCAGTCGGCGCTGTTCCATGCCA
GCTGCTGGAGCTACCTGATCGTCAACATCCTGATCGCCGTGCTGATGCCGACGCCGCGCCAGTTGCTGCCGATCTTCCTC
CTGGCGCTGTTCGACATCCTCGCGCTGTGCGGCCTGTTCTACGCCGCCGGCGGCGTGCCCAGCGGCATCGGCAACCTGCT
GGTGGTGGCGGTGGGCATCGCCAACATCCTGCTGCGCGGGCGCATCGGCCTGCTGATCGCCGCCGTCGCCGCGATCGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGCCAGCCCACGGCGATCAACCACTACGTCCAGGCCGGCAGCCTCGGCGCC
CTGAGCTTCGCCGCCGCGCTGCTGCTGCAGGGCCTGGCGCGGCGCCAGCAACTCACCGAGCACCTGGCCGAGGAACGCGC
CACCACCGTGGCCAACCTCGAAGAACTCAACGCCCTCATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACAGCC
GGCACCGAGTGCTGCTGGCCAACCAGAGCGCCCTGGGCCTGCTGGCCCAGCCGGAACTGGCCGGCAAGCTCGCCACCGAG
CATTGCCCGGAGCTGCTCGACAGCCTGCAGCAGTGGGAGCGCAACCCCTCGCTGCGCCCGCCCAGCCTGCAGGCGCCCGA
AGGCGGCCCCATGCTGCAGCCGAGCTTCATCCCGCTGCGCCGCGGCGAGGAGCAGCACACCCTGGTGTTCCTCGAAGACA
TCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCGGCCCTGGGCCGGCTCACCGCCGGCATCGCCCACGAGATC
CGCAACCCCCTGGGCGCCATCAGCCACGCCGCGCAGCTGCTGCAGGAATCCGAAACGCTCGACGCCCCCGACCGGCGCCT
GACGCAGATCATCCAGGACCAGTCGCGACGCATGAACCTGGTGATCGAGAACGTCCTGCAACTGTCGCGGCGACGCCAGG
CCGAGCCGCAACAGCTGGACCTCAGGCAGTGGCTGCAACGCTTCACCGACGAGCAGCGCGAAGGCCTGCGCGGCGACCAG
CAGATCCACCTGCAAATGGGCGGCGGCGAGATTCAGACGCGCATGGACCCCAGCCAACTCACCCAGGTGCTGGGTAACCT
GGTGCAGAATGGGTTACGGTACAGTGCCCGGCAGAATGGCAGCGGCCAGGTGTGGTTGAACCTGTTCCGCGACCGGGACA
GCGACCTGCCGGTGCTGGAGGTGCTCGACGACGGCCCCGGCATCGCCCCGGAGCAGCTGGGCAAGCTGTTCGAACCCTTC
TTCACCACCGAGAGCAAGGGCACCGGGCTGGGCCTGTACATTTCCCGCGAGCTGTGCGAAAGCAACCAGGCTCGCATCGA
CTTCAAGAACCGCGACGAAGGCGGTGGCAGCTTCCGCATCACCTTCGCCCACCCGCGCAAGCAGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5D6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

73.295

99.811

0.732