Detailed information NTG0075998

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDO07_RS00655
• Genome accession: NZ_AP024937
• Coordinates: 119558..120628 (+)
• Length: 356 a.a.
• NCBI ID: WP_223965843.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain AK1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 114558..125628

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO07_RS00635 (TthAK1_01220)	-	115073..115855 (+)	783	WP_223965841.1	RNA methyltransferase	-
LDO07_RS00640 (TthAK1_01230)	groES	115953..116258 (+)	306	WP_011174076.1	co-chaperone GroES	-
LDO07_RS00645 (TthAK1_01240)	groL	116271..117902 (+)	1632	WP_011174077.1	chaperonin GroEL	-
LDO07_RS00650 (TthAK1_01250)	-	117966..119498 (-)	1533	WP_223965842.1	thermostable carboxypeptidase 1	-
LDO07_RS00655 (TthAK1_01260)	pilD	119558..120628 (+)	1071	WP_223965843.1	A24 family peptidase	Machinery gene
LDO07_RS00660 (TthAK1_01270)	-	120666..121169 (+)	504	WP_223965844.1	DUF2939 domain-containing protein	-
LDO07_RS00665 (TthAK1_01280)	-	121183..122103 (+)	921	WP_223965845.1	nitroreductase family protein	-
LDO07_RS00670 (TthAK1_01290)	-	122057..122833 (-)	777	WP_223965846.1	C40 family peptidase	-
LDO07_RS00675 (TthAK1_01300)	-	122834..123592 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
LDO07_RS00680 (TthAK1_01310)	recF	123577..124608 (-)	1032	WP_223965847.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38101.41 Da
• Isoelectric Point: 7.7132

>NTDB_id=75998 LDO07_RS00655 WP_223965843.1 119558..120628(+) (pilD) [Thermus thermophilus strain AK1]
MWPLLALFLGLAVGSFLNVVIHRLPRGESVVYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDLLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNFFLRRFKEGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVAFPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLL
LRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1071 bp

>NTDB_id=75998 LDO07_RS00655 WP_223965843.1 119558..120628(+) (pilD) [Thermus thermophilus strain AK1]
ATGTGGCCCCTTTTAGCCCTGTTCCTCGGTCTCGCGGTGGGTTCGTTTCTCAACGTGGTCATCCACCGCCTGCCCCGGGG
GGAGTCCGTCGTCTACCCCCCATCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCTCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGTTACGGGAACTTTTTCCTGAGGCGCTTTAAGGAGGGGAGGGCCGAGGTTCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTCGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCCTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCTTCCCCGACCGGCTCACCCTGCCCCTTTTGCCTCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGCGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGG
CCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTCTGGGCCTTCTC
CTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTG
GGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (102-209)

• Type IV leader peptidase family (Peptidase_A24) (219-319)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (9-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.386	100	0.478