Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilS   Type   Regulator
Locus tag   H7R23_RS18285 Genome accession   NZ_AP021936
Coordinates   3813707..3815275 (+) Length   522 a.a.
NCBI ID   WP_202744975.1    Uniprot ID   A0A6S4UYT8
Organism   Acinetobacter pittii strain WP2-W18-ESBL-11     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 3808707..3820275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R23_RS18265 (WP2W18E11_35660) hom 3809198..3810499 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  H7R23_RS18270 (WP2W18E11_35670) thrC 3810554..3811693 (+) 1140 WP_002048893.1 threonine synthase -
  H7R23_RS18275 (WP2W18E11_35680) pbpG 3811802..3812848 (-) 1047 WP_141690933.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  H7R23_RS18280 (WP2W18E11_35690) gacA 3813061..3813696 (+) 636 WP_002121174.1 response regulator -
  H7R23_RS18285 (WP2W18E11_35700) pilS 3813707..3815275 (+) 1569 WP_202744975.1 sensor histidine kinase Regulator
  H7R23_RS18290 (WP2W18E11_35710) pilR 3815299..3816711 (+) 1413 WP_017481910.1 sigma-54-dependent transcriptional regulator Regulator
  H7R23_RS18295 (WP2W18E11_35720) ctpA 3816715..3817899 (-) 1185 WP_002121269.1 S41 family peptidase -
  H7R23_RS18300 (WP2W18E11_35730) gpmI 3817915..3819462 (-) 1548 WP_005804050.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence


Protein


Download         Length: 522 a.a.        Molecular weight: 59109.64 Da        Isoelectric Point: 6.2829

>NTDB_id=75997 H7R23_RS18285 WP_202744975.1 3813707..3815275(+) (pilS) [Acinetobacter pittii strain WP2-W18-ESBL-11]
MQFPLNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFISTQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFLKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=75997 H7R23_RS18285 WP_202744975.1 3813707..3815275(+) (pilS) [Acinetobacter pittii strain WP2-W18-ESBL-11]
ATGCAATTTCCCCTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ACACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGTTTTAAGTTTATTTCAACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTCTATGTGATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCTTTGCTCATAACATTACTTGCAG
TCATTGCGGTTATTTATCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACATGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCACTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGTTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTATGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAATTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCACAACAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATCCGTAATCCTCTTGCAGCTATTGTTCAAGCAAATGAATTACTCAAAGATAGTGACGCGGAACAGCA
AAATACTTTGCGCAATATGATTGGTAAGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACATATCCCATCCAGATTGAATTAAACGACTTCTTAAAAACGTTATTAGATGAAGATCTATCTGATGTTAAA
CATGCGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A6S4UYT8

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.444

100

0.944


Multiple sequence alignment