Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OSV60_RS01715 Genome accession   NZ_CP113077
Coordinates   365614..366096 (+) Length   160 a.a.
NCBI ID   WP_098713946.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 86II/2C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360614..371096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV60_RS01705 (OSV60_01705) pilX 360917..361735 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSV60_RS01710 (OSV60_01710) pilY1 361747..365601 (+) 3855 WP_213063373.1 PilC/PilY family type IV pilus protein Machinery gene
  OSV60_RS01715 (OSV60_01715) pilY2 365614..366096 (+) 483 WP_098713946.1 type IV pilin protein Machinery gene
  OSV60_RS01720 (OSV60_01720) pilE 366093..366518 (+) 426 WP_098713945.1 type IV pilin protein Machinery gene
  OSV60_RS01725 (OSV60_01725) rpsP 366665..366916 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OSV60_RS01730 (OSV60_01730) rimM 366936..367484 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  OSV60_RS01735 (OSV60_01735) trmD 367530..368270 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OSV60_RS01740 (OSV60_01740) rplS 368478..368846 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  OSV60_RS01745 (OSV60_01745) - 368899..369840 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  OSV60_RS01750 (OSV60_01750) - 369955..370986 (-) 1032 WP_001189454.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17643.92 Da        Isoelectric Point: 8.8351

>NTDB_id=759953 OSV60_RS01715 WP_098713946.1 365614..366096(+) (pilY2) [Acinetobacter baumannii strain 86II/2C]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=759953 OSV60_RS01715 WP_098713946.1 365614..366096(+) (pilY2) [Acinetobacter baumannii strain 86II/2C]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-121)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

95.625

100

0.956
  comE Acinetobacter baylyi ADP1

40.116

100

0.431