Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OSV60_RS01705 Genome accession   NZ_CP113077
Coordinates   360917..361735 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 86II/2C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355917..366735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV60_RS01670 (OSV60_01670) - 356499..356629 (-) 131 Protein_318 hypothetical protein -
  OSV60_RS01675 (OSV60_01675) rpoZ 356668..356946 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSV60_RS01680 (OSV60_01680) gmk 357019..357648 (-) 630 WP_000015937.1 guanylate kinase -
  OSV60_RS01685 (OSV60_01685) ispH 357771..358721 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSV60_RS01690 (OSV60_01690) fimU 358891..359364 (+) 474 WP_001214059.1 pilus assembly FimT family protein Machinery gene
  OSV60_RS01695 (OSV60_01695) pilV 359358..359918 (+) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  OSV60_RS01700 (OSV60_01700) pilW 359919..360920 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSV60_RS01705 (OSV60_01705) pilX 360917..361735 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSV60_RS01710 (OSV60_01710) pilY1 361747..365601 (+) 3855 WP_213063373.1 PilC/PilY family type IV pilus protein Machinery gene
  OSV60_RS01715 (OSV60_01715) pilY2 365614..366096 (+) 483 WP_098713946.1 type IV pilin protein Machinery gene
  OSV60_RS01720 (OSV60_01720) pilE 366093..366518 (+) 426 WP_098713945.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=759951 OSV60_RS01705 WP_000149374.1 360917..361735(+) (pilX) [Acinetobacter baumannii strain 86II/2C]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=759951 OSV60_RS01705 WP_000149374.1 360917..361735(+) (pilX) [Acinetobacter baumannii strain 86II/2C]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993