Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OSH14_RS16010 Genome accession   NZ_CP113071
Coordinates   3411265..3411825 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3406265..3416825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH14_RS16000 (OSH14_16000) pilX 3409448..3410266 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSH14_RS16005 (OSH14_16005) pilW 3410263..3411264 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSH14_RS16010 (OSH14_16010) pilV 3411265..3411825 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSH14_RS16015 (OSH14_16015) fimU 3411819..3412292 (-) 474 WP_168726697.1 GspH/FimT family pseudopilin Machinery gene
  OSH14_RS16020 (OSH14_16020) ispH 3412462..3413412 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSH14_RS16025 (OSH14_16025) gmk 3413535..3414164 (+) 630 WP_000015937.1 guanylate kinase -
  OSH14_RS16030 (OSH14_16030) rpoZ 3414237..3414515 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSH14_RS16035 (OSH14_16035) - 3414554..3414683 (+) 130 Protein_3118 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=759789 OSH14_RS16010 WP_002194578.1 3411265..3411825(-) (pilV) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=759789 OSH14_RS16010 WP_002194578.1 3411265..3411825(-) (pilV) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTCTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414