Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   OSH14_RS16005 Genome accession   NZ_CP113071
Coordinates   3410263..3411264 (-) Length   333 a.a.
NCBI ID   WP_000079197.1    Uniprot ID   A0A009TMX3
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405263..3416264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH14_RS15995 (OSH14_15995) pilY1 3405582..3409436 (-) 3855 WP_171945433.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH14_RS16000 (OSH14_16000) pilX 3409448..3410266 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSH14_RS16005 (OSH14_16005) pilW 3410263..3411264 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSH14_RS16010 (OSH14_16010) pilV 3411265..3411825 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSH14_RS16015 (OSH14_16015) fimU 3411819..3412292 (-) 474 WP_168726697.1 GspH/FimT family pseudopilin Machinery gene
  OSH14_RS16020 (OSH14_16020) ispH 3412462..3413412 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSH14_RS16025 (OSH14_16025) gmk 3413535..3414164 (+) 630 WP_000015937.1 guanylate kinase -
  OSH14_RS16030 (OSH14_16030) rpoZ 3414237..3414515 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSH14_RS16035 (OSH14_16035) - 3414554..3414683 (+) 130 Protein_3118 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35803.50 Da        Isoelectric Point: 6.1010

>NTDB_id=759788 OSH14_RS16005 WP_000079197.1 3410263..3411264(-) (pilW) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=759788 OSH14_RS16005 WP_000079197.1 3410263..3411264(-) (pilW) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACTTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCTGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TMX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

100

100

1