Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OSH14_RS15990 Genome accession   NZ_CP113071
Coordinates   3405087..3405569 (-) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3400087..3410569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH14_RS15955 (OSH14_15955) - 3400194..3401228 (+) 1035 WP_002027627.1 lipase secretion chaperone -
  OSH14_RS15960 (OSH14_15960) - 3401343..3402284 (+) 942 WP_103235966.1 triacylglycerol lipase -
  OSH14_RS15965 (OSH14_15965) rplS 3402337..3402705 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  OSH14_RS15970 (OSH14_15970) trmD 3402913..3403653 (-) 741 WP_168726698.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OSH14_RS15975 (OSH14_15975) rimM 3403699..3404247 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  OSH14_RS15980 (OSH14_15980) rpsP 3404267..3404518 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  OSH14_RS15985 (OSH14_15985) pilE 3404665..3405090 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OSH14_RS15990 (OSH14_15990) pilY2 3405087..3405569 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OSH14_RS15995 (OSH14_15995) pilY1 3405582..3409436 (-) 3855 WP_171945433.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH14_RS16000 (OSH14_16000) pilX 3409448..3410266 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=759785 OSH14_RS15990 WP_001046417.1 3405087..3405569(-) (pilY2) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=759785 OSH14_RS15990 WP_001046417.1 3405087..3405569(-) (pilY2) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444