Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OSH14_RS16000 Genome accession   NZ_CP113071
Coordinates   3409448..3410266 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404448..3415266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH14_RS15985 (OSH14_15985) pilE 3404665..3405090 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OSH14_RS15990 (OSH14_15990) pilY2 3405087..3405569 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OSH14_RS15995 (OSH14_15995) pilY1 3405582..3409436 (-) 3855 WP_171945433.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH14_RS16000 (OSH14_16000) pilX 3409448..3410266 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSH14_RS16005 (OSH14_16005) pilW 3410263..3411264 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSH14_RS16010 (OSH14_16010) pilV 3411265..3411825 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSH14_RS16015 (OSH14_16015) fimU 3411819..3412292 (-) 474 WP_168726697.1 GspH/FimT family pseudopilin Machinery gene
  OSH14_RS16020 (OSH14_16020) ispH 3412462..3413412 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSH14_RS16025 (OSH14_16025) gmk 3413535..3414164 (+) 630 WP_000015937.1 guanylate kinase -
  OSH14_RS16030 (OSH14_16030) rpoZ 3414237..3414515 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSH14_RS16035 (OSH14_16035) - 3414554..3414683 (+) 130 Protein_3118 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=759787 OSH14_RS16000 WP_000149374.1 3409448..3410266(-) (pilX) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=759787 OSH14_RS16000 WP_000149374.1 3409448..3410266(-) (pilX) [Acinetobacter baumannii strain A118 DeltaH0N27_10830::kan]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993