Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   OSH13_RS16120 Genome accession   NZ_CP113070
Coordinates   3436854..3437594 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3431854..3442594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH13_RS16100 (OSH13_16100) aroB 3432396..3433478 (-) 1083 WP_168726692.1 3-dehydroquinate synthase -
  OSH13_RS16105 (OSH13_16105) aroK 3433507..3434076 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OSH13_RS16110 (OSH13_16110) pilQ 3434088..3436253 (-) 2166 WP_031993779.1 type IV pilus secretin PilQ Machinery gene
  OSH13_RS16115 (OSH13_16115) pilP 3436316..3436843 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OSH13_RS16120 (OSH13_16120) pilO 3436854..3437594 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OSH13_RS16125 (OSH13_16125) pilN 3437591..3438232 (-) 642 WP_118978219.1 PilN domain-containing protein Machinery gene
  OSH13_RS16130 (OSH13_16130) pilM 3438232..3439290 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OSH13_RS16135 (OSH13_16135) ponA 3439452..3442007 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=759744 OSH13_RS16120 WP_000076101.1 3436854..3437594(-) (pilO) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=759744 OSH13_RS16120 WP_000076101.1 3436854..3437594(-) (pilO) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683