Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OSH13_RS16125 Genome accession   NZ_CP113070
Coordinates   3437591..3438232 (-) Length   213 a.a.
NCBI ID   WP_118978219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3432591..3443232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH13_RS16105 (OSH13_16105) aroK 3433507..3434076 (-) 570 WP_000643712.1 shikimate kinase AroK -
  OSH13_RS16110 (OSH13_16110) pilQ 3434088..3436253 (-) 2166 WP_031993779.1 type IV pilus secretin PilQ Machinery gene
  OSH13_RS16115 (OSH13_16115) pilP 3436316..3436843 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  OSH13_RS16120 (OSH13_16120) pilO 3436854..3437594 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  OSH13_RS16125 (OSH13_16125) pilN 3437591..3438232 (-) 642 WP_118978219.1 PilN domain-containing protein Machinery gene
  OSH13_RS16130 (OSH13_16130) pilM 3438232..3439290 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  OSH13_RS16135 (OSH13_16135) ponA 3439452..3442007 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  OSH13_RS16140 (OSH13_16140) - 3442025..3442849 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  OSH13_RS16145 (OSH13_16145) - 3442852..3443184 (-) 333 WP_000169599.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24030.42 Da        Isoelectric Point: 5.8601

>NTDB_id=759745 OSH13_RS16125 WP_118978219.1 3437591..3438232(-) (pilN) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRNA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRIGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=759745 OSH13_RS16125 WP_118978219.1 3437591..3438232(-) (pilN) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTAATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAATCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709