Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OSH13_RS15985 Genome accession   NZ_CP113070
Coordinates   3405634..3406116 (-) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3400634..3411116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSH13_RS15950 (OSH13_15950) - 3400741..3401775 (+) 1035 WP_002027627.1 lipase secretion chaperone -
  OSH13_RS15955 (OSH13_15955) - 3401890..3402831 (+) 942 WP_103235966.1 triacylglycerol lipase -
  OSH13_RS15960 (OSH13_15960) rplS 3402884..3403252 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  OSH13_RS15965 (OSH13_15965) trmD 3403460..3404200 (-) 741 WP_168726698.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OSH13_RS15970 (OSH13_15970) rimM 3404246..3404794 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  OSH13_RS15975 (OSH13_15975) rpsP 3404814..3405065 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  OSH13_RS15980 (OSH13_15980) pilE 3405212..3405637 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  OSH13_RS15985 (OSH13_15985) pilY2 3405634..3406116 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  OSH13_RS15990 (OSH13_15990) pilY1 3406129..3409983 (-) 3855 WP_171945433.1 PilC/PilY family type IV pilus protein Machinery gene
  OSH13_RS15995 (OSH13_15995) pilX 3409995..3410813 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=759735 OSH13_RS15985 WP_001046417.1 3405634..3406116(-) (pilY2) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=759735 OSH13_RS15985 WP_001046417.1 3405634..3406116(-) (pilY2) [Acinetobacter baumannii strain A118 DeltaH0N27_10825::kan]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444