Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   OSV61_RS01575 Genome accession   NZ_CP113069
Coordinates   337383..337865 (+) Length   160 a.a.
NCBI ID   WP_065718864.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 29D2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332383..342865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV61_RS01565 (OSV61_01565) pilX 332686..333504 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSV61_RS01570 (OSV61_01570) pilY1 333516..337370 (+) 3855 WP_065718863.1 PilC/PilY family type IV pilus protein Machinery gene
  OSV61_RS01575 (OSV61_01575) pilY2 337383..337865 (+) 483 WP_065718864.1 type IV pilin protein Machinery gene
  OSV61_RS01580 (OSV61_01580) pilE 337862..338287 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene
  OSV61_RS01585 (OSV61_01585) rpsP 338434..338685 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  OSV61_RS01590 (OSV61_01590) rimM 338705..339253 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  OSV61_RS01595 (OSV61_01595) trmD 339299..340039 (+) 741 WP_000464600.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OSV61_RS01600 (OSV61_01600) rplS 340248..340616 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  OSV61_RS01605 (OSV61_01605) - 340669..341610 (-) 942 WP_085916958.1 triacylglycerol lipase -
  OSV61_RS01610 (OSV61_01610) - 341725..342759 (-) 1035 WP_032008730.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17561.81 Da        Isoelectric Point: 8.4834

>NTDB_id=759662 OSV61_RS01575 WP_065718864.1 337383..337865(+) (pilY2) [Acinetobacter baumannii strain 29D2]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=759662 OSV61_RS01575 WP_065718864.1 337383..337865(+) (pilY2) [Acinetobacter baumannii strain 29D2]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

40.698

100

0.438