Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   OSV61_RS01565 Genome accession   NZ_CP113069
Coordinates   332686..333504 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 29D2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327686..338504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV61_RS01530 (OSV61_01530) - 328268..328398 (-) 131 Protein_291 hypothetical protein -
  OSV61_RS01535 (OSV61_01535) rpoZ 328437..328715 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSV61_RS01540 (OSV61_01540) gmk 328788..329417 (-) 630 WP_000015937.1 guanylate kinase -
  OSV61_RS01545 (OSV61_01545) ispH 329540..330490 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSV61_RS01550 (OSV61_01550) fimU 330660..331133 (+) 474 WP_065718862.1 GspH/FimT family pseudopilin Machinery gene
  OSV61_RS01555 (OSV61_01555) pilV 331127..331687 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSV61_RS01560 (OSV61_01560) pilW 331688..332689 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSV61_RS01565 (OSV61_01565) pilX 332686..333504 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OSV61_RS01570 (OSV61_01570) pilY1 333516..337370 (+) 3855 WP_065718863.1 PilC/PilY family type IV pilus protein Machinery gene
  OSV61_RS01575 (OSV61_01575) pilY2 337383..337865 (+) 483 WP_065718864.1 type IV pilin protein Machinery gene
  OSV61_RS01580 (OSV61_01580) pilE 337862..338287 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=759660 OSV61_RS01565 WP_000149374.1 332686..333504(+) (pilX) [Acinetobacter baumannii strain 29D2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=759660 OSV61_RS01565 WP_000149374.1 332686..333504(+) (pilX) [Acinetobacter baumannii strain 29D2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTTTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGATATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
TACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993