Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OSV61_RS01550 Genome accession   NZ_CP113069
Coordinates   330660..331133 (+) Length   157 a.a.
NCBI ID   WP_065718862.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 29D2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325660..336133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV61_RS01525 (OSV61_01525) - 326123..328228 (-) 2106 WP_001117590.1 HD domain-containing protein -
  OSV61_RS01530 (OSV61_01530) - 328268..328398 (-) 131 Protein_291 hypothetical protein -
  OSV61_RS01535 (OSV61_01535) rpoZ 328437..328715 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OSV61_RS01540 (OSV61_01540) gmk 328788..329417 (-) 630 WP_000015937.1 guanylate kinase -
  OSV61_RS01545 (OSV61_01545) ispH 329540..330490 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OSV61_RS01550 (OSV61_01550) fimU 330660..331133 (+) 474 WP_065718862.1 GspH/FimT family pseudopilin Machinery gene
  OSV61_RS01555 (OSV61_01555) pilV 331127..331687 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  OSV61_RS01560 (OSV61_01560) pilW 331688..332689 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  OSV61_RS01565 (OSV61_01565) pilX 332686..333504 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16849.48 Da        Isoelectric Point: 8.5355

>NTDB_id=759657 OSV61_RS01550 WP_065718862.1 330660..331133(+) (fimU) [Acinetobacter baumannii strain 29D2]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPI
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=759657 OSV61_RS01550 WP_065718862.1 330660..331133(+) (fimU) [Acinetobacter baumannii strain 29D2]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTGGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCATT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994