Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   OS090_RS01865 Genome accession   NZ_CP113018
Coordinates   355019..356647 (+) Length   542 a.a.
NCBI ID   WP_267793759.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Taliyah     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 350019..361647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS090_RS01845 ssb 351064..351357 (+) 294 WP_070678286.1 cassette chromosome ssDNA-binding protein -
  OS090_RS01850 cch1 351354..353147 (+) 1794 WP_418896070.1 cassette chromosome replicative helicase -
  OS090_RS01855 - 353215..353472 (+) 258 WP_070840097.1 hypothetical protein -
  OS090_RS01860 ccrA 353649..354998 (+) 1350 WP_267793758.1 cassette chromosome recombinase CcrA Machinery gene
  OS090_RS01865 ccrB 355019..356647 (+) 1629 WP_267793759.1 cassette chromosome recombinase CcrB Machinery gene
  OS090_RS01870 - 357164..357514 (+) 351 WP_049400177.1 SAUGI family uracil-DNA glycosylase inhibitor -
  OS090_RS01875 - 357601..357912 (+) 312 WP_267793760.1 DUF960 domain-containing protein -
  OS090_RS01880 - 357930..358439 (+) 510 WP_049400181.1 DUF1643 domain-containing protein -
  OS090_RS01885 - 358454..358675 (+) 222 WP_049400183.1 hypothetical protein -
  OS090_RS01890 - 358740..358988 (-) 249 WP_049400185.1 hypothetical protein -
  OS090_RS01895 - 359008..360147 (-) 1140 WP_267793782.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62470.18 Da        Isoelectric Point: 9.4015

>NTDB_id=759136 OS090_RS01865 WP_267793759.1 355019..356647(+) (ccrB) [Staphylococcus aureus strain Taliyah]
MQQLKQKHVGIYVRVSTEIQNTEGYSINGQINQIREYCDFNNFVVVDVYADRGISGKSMNRPELQRLLKDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSEKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQILEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQINQLKHQQNQEKPFYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFFVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=759136 OS090_RS01865 WP_267793759.1 355019..356647(+) (ccrB) [Staphylococcus aureus strain Taliyah]
ATGCAACAACTCAAACAAAAACATGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAATACTGAAGGCTATAGTAT
CAATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGTTGTTGTAGATGTATACGCTGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCATATCGATTGTGTCATG
GTGTATAAAACGAATAGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTTAATACAAGCAGTGGTAAACTGATGCTACAAATACTTGCAAGCTTTTCTG
AATTTGAACGCAATAACATTGTCGAGAATGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTAGGGTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCTAATATCGTCAAATA
TATCTTTGAGTCATATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAAGGTTATGTCACTAAGA
AGGGTAATCCATTCAGTACATCAGCTATAGCTTATATCCTTTCCAATCCCTTCTACATTGGTAAAATTCAATTTGCGAAG
TATAAAGATTGGAATGAAAAGCGACGTAAAGGCCTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAACAAGTAAGTGAAAAACCACAAGTGCATGGTAAAGGAACCA
ATCTATTAACGGGTATTATTCACTGCCCACAATGTGGTGCACCAATGGCAGCTAGTAATACAACAAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAATTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCTGAGGTGATTGAGAAATACGTTATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTGAATGATATCACAAACCAAATTAATCAACTCAAGCACCAACAAAATCAAGAGAAACCAT
TTTATGATACTAAACAAATCGCTGCTTTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGACATCCGTAAAGATGAGAATCATAAAAAGCAATTCTTTGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTT
TGCCACAAACCCTATATCTTACTATTTAG

Domains

Predicted by InterProScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

85.055

100

0.851