Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   OS090_RS01860 Genome accession   NZ_CP113018
Coordinates   353649..354998 (+) Length   449 a.a.
NCBI ID   WP_267793758.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Taliyah     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 348649..359998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS090_RS01840 - 349883..350884 (+) 1002 WP_070678289.1 hypothetical protein -
  OS090_RS01845 ssb 351064..351357 (+) 294 WP_070678286.1 cassette chromosome ssDNA-binding protein -
  OS090_RS01850 cch1 351354..353147 (+) 1794 WP_418896070.1 cassette chromosome replicative helicase -
  OS090_RS01855 - 353215..353472 (+) 258 WP_070840097.1 hypothetical protein -
  OS090_RS01860 ccrA 353649..354998 (+) 1350 WP_267793758.1 cassette chromosome recombinase CcrA Machinery gene
  OS090_RS01865 ccrB 355019..356647 (+) 1629 WP_267793759.1 cassette chromosome recombinase CcrB Machinery gene
  OS090_RS01870 - 357164..357514 (+) 351 WP_049400177.1 SAUGI family uracil-DNA glycosylase inhibitor -
  OS090_RS01875 - 357601..357912 (+) 312 WP_267793760.1 DUF960 domain-containing protein -
  OS090_RS01880 - 357930..358439 (+) 510 WP_049400181.1 DUF1643 domain-containing protein -
  OS090_RS01885 - 358454..358675 (+) 222 WP_049400183.1 hypothetical protein -
  OS090_RS01890 - 358740..358988 (-) 249 WP_049400185.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52519.51 Da        Isoelectric Point: 10.1726

>NTDB_id=759135 OS090_RS01860 WP_267793758.1 353649..354998(+) (ccrA) [Staphylococcus aureus strain Taliyah]
MKQAIGYLRQSTLKQQSLAAQKQTIKALAEKHSIQHITFYRDKQSGRTDKRNGYQQITELIQQGQCNVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTINKSEAPTVKAVFNYYLQGYGYKKIAQCLEADDKFINRKPYQVRNIILNPNYCGRIINQYGQYENMFPAIVSTTI
YEEAQVIRTQKQVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKNHTLRYYVCPQNLNASRFVCEFKGINAQELETSVLAT
CQNFFQNQQLYSKINHTIQQRLKRQRDIETKTTLNHKQLIEKLAQGKIDAETFREQTQSLHQQSKPISSISAYQIQRAFQ
NIIQQRFTLNMLYPYIDQIHITKKKMLVGIYFKNEPLNIVNQKTQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=759135 OS090_RS01860 WP_267793758.1 353649..354998(+) (ccrA) [Staphylococcus aureus strain Taliyah]
ATGAAACAAGCAATTGGTTACTTACGTCAAAGTACACTCAAACAACAATCTCTAGCAGCACAGAAACAGACCATCAAAGC
ACTAGCCGAAAAACACAGTATTCAACACATTACCTTTTATAGAGATAAGCAATCAGGTCGCACTGATAAGCGAAATGGTT
ACCAACAAATTACTGAACTGATTCAACAAGGACAATGTAACGTATTATGTTGCTACCGTCTGAATCGACTTCATCGTAAC
CTAAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAGTATCATGTTCATATCTTAAGCGTTCATGATGGCTACTTCGA
CATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGCGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCGAAACAAGGTAAAATGATTACGACCCATGCACCCTTTGGCTATCACTATCAT
AATGGGACATTCACAATAAACAAGTCAGAAGCACCAACAGTAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCGCAATGCTTAGAAGCTGATGATAAATTCATTAATCGTAAGCCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTATTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTATCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAACCAACTCAAACAAAAAATCAA
ATGTCCTTATTGTGATTCAACACTAACTAATATGACCATTAGAAAAAAGAATCATACATTACGTTATTACGTTTGTCCTC
AAAATTTGAATGCATCTCGTTTTGTCTGTGAATTCAAAGGGATCAACGCACAAGAATTAGAAACAAGTGTTTTAGCGACT
TGTCAGAACTTCTTTCAAAATCAACAGCTCTATTCAAAAATAAACCATACTATTCAACAACGACTCAAAAGACAAAGAGA
TATAGAAACTAAAACTACACTCAATCACAAACAGCTGATAGAAAAATTAGCCCAAGGCAAAATTGATGCAGAAACGTTCA
GAGAACAAACGCAATCATTACATCAACAATCAAAACCTATATCATCAATCAGTGCGTATCAAATTCAAAGAGCGTTTCAA
AACATCATTCAACAACGTTTCACGCTAAACATGTTATACCCTTATATTGATCAAATTCATATCACAAAAAAGAAAATGCT
TGTTGGCATTTATTTCAAAAATGAACCCTTAAATATCGTCAATCAAAAAACACAATCATCGATTGCTTAA

Domains

Predicted by InterProScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Recombinase (Recombinase)

(169-250)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

91.982

100

0.92
  ccrA Staphylococcus aureus N315

75.724

100

0.757