Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   OA858_RS01555 Genome accession   NZ_CP112874
Coordinates   368988..369359 (+) Length   123 a.a.
NCBI ID   WP_281007626.1    Uniprot ID   -
Organism   Pseudanabaena galeata CCNP1313     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363988..374359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OA858_RS01530 (OA858_01530) - 364088..364525 (-) 438 WP_281007622.1 heavy metal-responsive transcriptional regulator -
  OA858_RS01535 (OA858_01535) - 364773..365507 (+) 735 WP_281007623.1 DUF305 domain-containing protein -
  OA858_RS01545 (OA858_01545) - 366133..367494 (+) 1362 WP_281007624.1 hypothetical protein -
  OA858_RS01550 (OA858_01550) - 367585..368568 (-) 984 WP_281007625.1 ATP-binding cassette domain-containing protein -
  OA858_RS01555 (OA858_01555) pilH 368988..369359 (+) 372 WP_281007626.1 PleD family two-component system response regulator Machinery gene
  OA858_RS01560 (OA858_01560) - 369586..370506 (+) 921 WP_281007627.1 DUF72 domain-containing protein -
  OA858_RS01565 (OA858_01565) - 370699..372438 (-) 1740 WP_281007628.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13851.19 Da        Isoelectric Point: 6.2250

>NTDB_id=758625 OA858_RS01555 WP_281007626.1 368988..369359(+) (pilH) [Pseudanabaena galeata CCNP1313]
MVKVLVVDDSPMVLEMVSAHLKQHGMEVTEANNGAEAVEKLKALTPDLVVTDVVMPQMNGYELCRWIKNNTSTKDVPVIM
CTTKSEEFDKYWGMKQGADAYLTKPYHPPELIKTIKQLLSQVK

Nucleotide


Download         Length: 372 bp        

>NTDB_id=758625 OA858_RS01555 WP_281007626.1 368988..369359(+) (pilH) [Pseudanabaena galeata CCNP1313]
ATGGTAAAAGTCCTCGTAGTGGACGATAGTCCGATGGTGTTGGAGATGGTCTCGGCACATTTAAAGCAACATGGTATGGA
AGTTACAGAAGCAAACAACGGTGCTGAGGCAGTAGAAAAGCTCAAAGCTTTAACGCCCGATCTCGTTGTTACTGATGTGG
TCATGCCTCAAATGAATGGTTATGAGTTATGCCGTTGGATCAAAAATAATACCTCTACGAAGGATGTACCCGTAATTATG
TGTACAACCAAAAGTGAGGAGTTTGATAAGTATTGGGGCATGAAGCAGGGAGCCGATGCTTACTTAACTAAGCCCTATCA
TCCACCTGAATTAATCAAAACAATTAAGCAGTTACTTAGCCAAGTCAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

61.345

96.748

0.594
  pilG Acinetobacter baumannii strain A118

38.655

96.748

0.374
  micA Streptococcus pneumoniae Cp1015

37.19

98.374

0.366