Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ORF34_RS17225 Genome accession   NZ_CP112873
Coordinates   3254610..3255254 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain O4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3249610..3260254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORF34_RS17190 (ORF34_17190) mrpB 3250802..3251233 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ORF34_RS17195 (ORF34_17195) mrpC 3251233..3251574 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ORF34_RS17200 (ORF34_17200) mrpD 3251567..3253048 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  ORF34_RS17205 (ORF34_17205) mrpE 3253054..3253530 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  ORF34_RS17210 (ORF34_17210) mrpF 3253530..3253814 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ORF34_RS17215 (ORF34_17215) mnhG 3253798..3254172 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ORF34_RS17220 (ORF34_17220) yuxO 3254211..3254591 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  ORF34_RS17225 (ORF34_17225) comA 3254610..3255254 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ORF34_RS17230 (ORF34_17230) comP 3255335..3257644 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  ORF34_RS17235 (ORF34_17235) comX 3257659..3257826 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  ORF34_RS17240 (ORF34_17240) comQ 3257814..3258713 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  ORF34_RS17245 (ORF34_17245) degQ 3258898..3259038 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ORF34_RS17250 (ORF34_17250) - 3259260..3259385 (+) 126 WP_003228793.1 hypothetical protein -
  ORF34_RS17255 (ORF34_17255) - 3259499..3259867 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=758604 ORF34_RS17225 WP_003220716.1 3254610..3255254(-) (comA) [Bacillus subtilis strain O4]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=758604 ORF34_RS17225 WP_003220716.1 3254610..3255254(-) (comA) [Bacillus subtilis strain O4]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1