Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   QIU11_RS29865 Genome accession   NZ_CP124600
Coordinates   6308084..6308608 (-) Length   174 a.a.
NCBI ID   WP_058177253.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Li010     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6303084..6313608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QIU11_RS29850 (QIU11_29850) aroB 6304200..6305306 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  QIU11_RS29855 (QIU11_29855) aroK 6305356..6305874 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QIU11_RS29860 (QIU11_29860) pilQ 6305886..6308030 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  QIU11_RS29865 (QIU11_29865) comL/pilP 6308084..6308608 (-) 525 WP_058177253.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QIU11_RS29870 (QIU11_29870) pilO 6308605..6309228 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QIU11_RS29875 (QIU11_29875) pilN 6309225..6309821 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QIU11_RS29880 (QIU11_29880) pilM 6309821..6310885 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QIU11_RS29885 (QIU11_29885) - 6311070..6313541 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19023.82 Da        Isoelectric Point: 9.4114

>NTDB_id=758606 QIU11_RS29865 WP_058177253.1 6308084..6308608(-) (comL/pilP) [Pseudomonas aeruginosa strain Li010]
MRARLILSSLLLAGLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=758606 QIU11_RS29865 WP_058177253.1 6308084..6308608(-) (comL/pilP) [Pseudomonas aeruginosa strain Li010]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCGGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCTGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.994

99.425

0.368