Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   OSC48_RS15845 Genome accession   NZ_CP112867
Coordinates   3468476..3470701 (-) Length   741 a.a.
NCBI ID   WP_266247797.1    Uniprot ID   -
Organism   Pseudomonas quebecensis isolate S1Bt7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3463476..3475701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC48_RS15810 (OSC48_15810) murB 3463855..3464874 (-) 1020 WP_266247803.1 UDP-N-acetylmuramate dehydrogenase -
  OSC48_RS15815 (OSC48_15815) - 3464871..3465335 (-) 465 WP_266247801.1 low molecular weight protein-tyrosine-phosphatase -
  OSC48_RS15820 (OSC48_15820) kdsB 3465335..3466099 (-) 765 WP_181076688.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSC48_RS15825 (OSC48_15825) - 3466096..3466281 (-) 186 WP_003174668.1 Trm112 family protein -
  OSC48_RS15830 (OSC48_15830) lpxK 3466306..3467316 (-) 1011 WP_181076686.1 tetraacyldisaccharide 4'-kinase -
  OSC48_RS15835 (OSC48_15835) - 3467316..3467744 (-) 429 WP_181076685.1 biopolymer transporter ExbD -
  OSC48_RS15840 (OSC48_15840) exbB 3467741..3468376 (-) 636 WP_159936015.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OSC48_RS15845 (OSC48_15845) comA 3468476..3470701 (-) 2226 WP_266247797.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OSC48_RS15850 (OSC48_15850) - 3470837..3471352 (+) 516 WP_181076681.1 DUF2062 domain-containing protein -
  OSC48_RS15855 (OSC48_15855) - 3471356..3472726 (-) 1371 WP_266247796.1 sensor histidine kinase -
  OSC48_RS15860 (OSC48_15860) - 3472713..3473429 (-) 717 WP_266247794.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79984.87 Da        Isoelectric Point: 10.9588

>NTDB_id=758479 OSC48_RS15845 WP_266247797.1 3468476..3470701(-) (comA) [Pseudomonas quebecensis isolate S1Bt7]
MRTGMCALALGLLAVVFLPTLPATGWLIGMLALALMLLPFRTYPLAFFLLGLSWACIGAQWALNDRLSPALDGQTRWVEG
RVTGLPQQTEEAVRFELTDGRSRAGRLPKRIRVSWRDGPPVRSGERWRLAITLKRPAGLLNFHGFDREAWLLAQRVGATG
SVKDGQRLAPAHNAWRDGVRQRLLAVDAHGREAGLAALVLGDGSGLTTEDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARRGAWPRGWPWLPWACGLAFAAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGVWWPLLLAFNGVLILEPL
ASLQAGFWLSFAAVAVLILAFSGRLGPWSLWQVWTRPQCAIAVGLFPVLLVLGLPISLSAPLANLVAVPWISLVVLPLAL
LGTALLSVPVVGEGLLWLAGGALDGLFVGLAWLAGHMPAWLPAQVPWAAWLVSLLGAVVLLLPRGVPLRGLGWPMLLLAV
FPPRAPVPHGQVDVLQLDVGQGQALILRTRNHTLLYDAGPRAGAFDLGARVVLPSLKKLGVAKLDLLLLSHADADHAGGA
VAIARGMPVDRVISGETQRLPALLGAQACVSGRQWVWDGVAFELWQWPEAISGNAKSCVLQVQANGERLLLTGDIDHAAE
RALLDSPLAVPTDWLQAPHHGSHSSSSWAFLERLAPRSVLISRGRGNAFGHPHPQVMERYRALGSRVYDSAEQGAVRLQL
GAFATPEVARGQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=758479 OSC48_RS15845 WP_266247797.1 3468476..3470701(-) (comA) [Pseudomonas quebecensis isolate S1Bt7]
ATGAGGACAGGGATGTGTGCGCTTGCGTTGGGGCTGCTGGCGGTGGTGTTCCTACCCACGCTGCCTGCCACGGGATGGCT
GATAGGCATGCTGGCGCTGGCGTTGATGCTGTTGCCATTTCGAACCTACCCACTGGCGTTTTTCCTGCTGGGACTGAGTT
GGGCGTGTATCGGCGCGCAGTGGGCCCTGAATGACCGGCTGTCGCCGGCGCTGGATGGGCAGACCCGTTGGGTAGAAGGC
CGGGTGACGGGGTTGCCGCAACAAACCGAAGAGGCGGTGCGTTTCGAACTGACCGACGGACGGTCGCGGGCGGGTCGATT
ACCCAAGCGTATTCGCGTGTCCTGGCGTGACGGCCCGCCGGTACGCAGCGGCGAACGATGGCGTTTGGCAATTACCTTGA
AACGGCCTGCCGGTCTGCTGAATTTCCATGGCTTTGACCGCGAAGCCTGGCTGCTGGCCCAGCGTGTCGGTGCGACCGGT
TCGGTGAAAGACGGCCAACGCCTGGCGCCAGCGCACAATGCCTGGCGCGACGGCGTGCGCCAGCGGCTGCTGGCGGTGGA
TGCCCATGGTCGCGAGGCGGGCCTGGCCGCTCTGGTGCTGGGCGATGGCTCCGGCCTCACCACTGAGGACTGGCAGGTCT
TGCAGGACACCGGCACGGTGCATCTGTTGGTGATTTCCGGGCAACACATCGGCCTGCTGGCAGGCCTGATCTACGGGCTG
ATCGCCGGGCTGGCGCGTCGGGGCGCCTGGCCGCGAGGCTGGCCGTGGCTGCCATGGGCCTGTGGCCTGGCGTTTGCCGC
CGCCCTGGGTTACGGATTGCTGGCCGGCTTCGGCGTGCCGGTGCAGCGTGCGTGTGTGATGGTAGGGCTGGTGCTGTTGT
GGCGTTTGCGTTTTCGTCACCTGGGCGTGTGGTGGCCATTGTTGCTGGCATTCAATGGGGTGTTGATCCTGGAGCCGTTG
GCCAGCCTGCAGGCAGGTTTCTGGCTGTCGTTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTCAGCGGGCGTCTGGGGCC
GTGGAGCCTCTGGCAGGTATGGACGCGGCCGCAATGCGCGATCGCCGTTGGGCTGTTTCCGGTACTGCTGGTGCTGGGGT
TGCCCATCAGCCTGAGTGCGCCGCTCGCCAATCTGGTGGCCGTGCCGTGGATCAGCCTGGTCGTACTGCCATTGGCGCTG
TTGGGCACCGCCCTGTTGAGCGTGCCAGTTGTAGGGGAAGGGCTGTTGTGGCTCGCGGGCGGCGCATTGGATGGGTTGTT
CGTCGGCCTGGCCTGGCTCGCAGGGCACATGCCCGCCTGGCTGCCGGCCCAAGTGCCGTGGGCTGCCTGGCTGGTCAGCC
TGCTCGGCGCGGTGGTGCTGTTATTGCCCCGCGGCGTGCCGCTGCGGGGGCTGGGTTGGCCGATGCTGCTGCTGGCGGTA
TTCCCTCCGCGCGCGCCGGTGCCCCACGGTCAGGTCGATGTGTTGCAACTGGATGTAGGGCAAGGGCAAGCGCTGATTCT
GCGTACCCGCAATCACACGTTGCTCTACGACGCCGGGCCGCGTGCGGGAGCGTTCGACCTGGGCGCGCGCGTGGTGCTGC
CGTCGTTGAAGAAACTTGGCGTCGCCAAACTGGACCTGCTGCTGCTCAGCCATGCCGATGCCGACCATGCGGGCGGCGCG
GTGGCGATCGCGCGAGGCATGCCGGTTGACCGCGTGATCAGCGGAGAAACGCAAAGGCTGCCGGCCCTGCTCGGCGCGCA
GGCGTGTGTCAGTGGCCGGCAGTGGGTATGGGACGGGGTGGCTTTTGAATTATGGCAATGGCCTGAGGCTATCAGCGGCA
ACGCGAAATCCTGTGTCCTGCAAGTGCAGGCCAACGGGGAGCGCCTATTGCTGACCGGCGATATCGATCACGCCGCCGAG
CGGGCGCTGCTCGACTCGCCGCTGGCGGTGCCGACCGACTGGCTGCAAGCGCCGCATCATGGCAGCCACAGCTCGTCCTC
CTGGGCCTTTCTGGAGCGCCTTGCGCCCCGTTCGGTGCTGATCTCGCGCGGGCGCGGCAACGCGTTCGGACATCCCCATC
CGCAGGTCATGGAGCGCTATCGGGCCCTGGGCAGCCGGGTCTACGACAGCGCCGAGCAAGGCGCCGTGCGTCTGCAATTG
GGCGCTTTTGCGACCCCGGAGGTTGCGCGCGGTCAACGGCGTTTCTGGCGCGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.111

97.166

0.594
  comA Ralstonia pseudosolanacearum GMI1000

36.136

100

0.389