Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OSC48_RS15840 Genome accession   NZ_CP112867
Coordinates   3467741..3468376 (-) Length   211 a.a.
NCBI ID   WP_159936015.1    Uniprot ID   -
Organism   Pseudomonas quebecensis isolate S1Bt7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3462741..3473376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSC48_RS15805 (OSC48_15805) - 3463122..3463793 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  OSC48_RS15810 (OSC48_15810) murB 3463855..3464874 (-) 1020 WP_266247803.1 UDP-N-acetylmuramate dehydrogenase -
  OSC48_RS15815 (OSC48_15815) - 3464871..3465335 (-) 465 WP_266247801.1 low molecular weight protein-tyrosine-phosphatase -
  OSC48_RS15820 (OSC48_15820) kdsB 3465335..3466099 (-) 765 WP_181076688.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OSC48_RS15825 (OSC48_15825) - 3466096..3466281 (-) 186 WP_003174668.1 Trm112 family protein -
  OSC48_RS15830 (OSC48_15830) lpxK 3466306..3467316 (-) 1011 WP_181076686.1 tetraacyldisaccharide 4'-kinase -
  OSC48_RS15835 (OSC48_15835) - 3467316..3467744 (-) 429 WP_181076685.1 biopolymer transporter ExbD -
  OSC48_RS15840 (OSC48_15840) exbB 3467741..3468376 (-) 636 WP_159936015.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OSC48_RS15845 (OSC48_15845) comA 3468476..3470701 (-) 2226 WP_266247797.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OSC48_RS15850 (OSC48_15850) - 3470837..3471352 (+) 516 WP_181076681.1 DUF2062 domain-containing protein -
  OSC48_RS15855 (OSC48_15855) - 3471356..3472726 (-) 1371 WP_266247796.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22767.94 Da        Isoelectric Point: 7.3613

>NTDB_id=758478 OSC48_RS15840 WP_159936015.1 3467741..3468376(-) (exbB) [Pseudomonas quebecensis isolate S1Bt7]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKEKLKALRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGAGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=758478 OSC48_RS15840 WP_159936015.1 3467741..3468376(-) (exbB) [Pseudomonas quebecensis isolate S1Bt7]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCGAGCCGTGTCACCCCCGAGCATCTGCTGGGGCAGGTGTGGGGCTGGATCAAGAACA
AACAGCTGGACAAGGAAAAGCTCAAGGCACTGCGCGCCGATTCACCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTGATCCACGAACTGGAGCGTTATAT
CAACGCTCTCGGCACCATCGCCGCCATGGCGCCGCTGCTCGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCGCGGGTATGACCACCAACGCGGCGGTGCTGGCCGGCGGCATTTCCAAGGCACTGATTACCACCGCG
GCAGGCTTGATGGTGGGGATTCCCTCGGTGTTCTTCCATCGTTTCCTGCAGCGCCGCATCGATGAACTGGTCGTGGGCAT
GGAACAGGAAGCCATCAAATTGGTGGAAGTGGTGCAGGGCGATCGCGACGTGGATCTGGTTGGAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848