Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   OPM66_RS16575 Genome accession   NZ_CP112860
Coordinates   3491918..3492391 (-) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain EAB2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3486918..3497391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPM66_RS16560 pilX 3489547..3490365 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  OPM66_RS16565 pilW 3490362..3491363 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  OPM66_RS16570 pilV 3491364..3491924 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  OPM66_RS16575 fimU 3491918..3492391 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  OPM66_RS16580 ispH 3492561..3493511 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  OPM66_RS16585 gmk 3493634..3494263 (+) 630 WP_000015937.1 guanylate kinase -
  OPM66_RS16590 rpoZ 3494336..3494614 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  OPM66_RS16595 - 3494653..3494782 (+) 130 Protein_3233 hypothetical protein -
  OPM66_RS16600 - 3494822..3496927 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=758420 OPM66_RS16575 WP_001214061.1 3491918..3492391(-) (fimU) [Acinetobacter baumannii strain EAB2]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=758420 OPM66_RS16575 WP_001214061.1 3491918..3492391(-) (fimU) [Acinetobacter baumannii strain EAB2]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987